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1. PPIRef PPIRef Public

   Dataset and package for working with protein-protein interactions in 3D

   Jupyter Notebook 90 8

2. PPIformer PPIformer Public

   Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)

   Jupyter Notebook 46 4

3. mutils mutils Public

   Mutation utilities for protein design

   Jupyter Notebook 5 1

4. ProteinTTT ProteinTTT Public

   Training on test proteins improves fitness, structure, and function prediction

   Python 9 1

5. pluskal-lab/MassSpecGym pluskal-lab/MassSpecGym Public

   MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)

   Jupyter Notebook 61 7

6. pluskal-lab/DreaMS pluskal-lab/DreaMS Public

   DreaMS (Deep Representations Empowering the Annotation of Mass Spectra)

   Jupyter Notebook 29 8