From a44020e5f4100bf64034d98aa20925d2a726b9b6 Mon Sep 17 00:00:00 2001 From: Leonardo Laiolo Date: Thu, 8 Feb 2024 08:50:47 +1100 Subject: [PATCH] update cpr --- .../cpr_phyto_changelog.dataresource.yaml | 6 ++++-- cpr_data/cpr_phyto_raw.dataresource.yaml | 18 ++++++++++------ cpr_data/cpr_samp.dataresource.yaml | 21 ++++++++++++------- cpr_data/cpr_zoop_changelog.dataresource.yaml | 6 ++++-- cpr_data/cpr_zoop_raw.dataresource.yaml | 21 ++++++++++++------- 5 files changed, 48 insertions(+), 24 deletions(-) diff --git a/cpr_data/cpr_phyto_changelog.dataresource.yaml b/cpr_data/cpr_phyto_changelog.dataresource.yaml index 0855dad..c82ab5e 100644 --- a/cpr_data/cpr_phyto_changelog.dataresource.yaml +++ b/cpr_data/cpr_phyto_changelog.dataresource.yaml @@ -13,12 +13,14 @@ schema: - name: TAXON_NAME title: "Taxonomic name that the species is currently identified as (post startdate)" type: string - required: true + constraints: + required: true - name: STARTDATE title: "Date from which the taxon_name was first consistently used (formatted string: YYYY-MM-DD)" type: date format: "%Y-%m-%d" - required: true + constraints: + required: true - name: PARENT_NAME title: "Taxon name which the species was known by before the start date" type: string diff --git a/cpr_data/cpr_phyto_raw.dataresource.yaml b/cpr_data/cpr_phyto_raw.dataresource.yaml index bbb8877..c7002ed 100644 --- a/cpr_data/cpr_phyto_raw.dataresource.yaml +++ b/cpr_data/cpr_phyto_raw.dataresource.yaml @@ -13,15 +13,18 @@ schema: - name: SAMPLE title: "Unique identifier for sample" type: string - required: true + constraints: + required: true - name: TAXON_NAME title: "Scientific name of taxa" type: string - required: true + constraints: + required: true - name: TAXON_GROUP title: "Functional group assigned to taxa" type: string - required: true + constraints: + required: true - name: GENUS title: "Genus name of taxa" type: string @@ -37,7 +40,8 @@ schema: - name: PHYTO_ABUNDANCE_M3 title: "Abundance of the taxa in cells per litre of water" type: number - required: true + constraints: + required: true - name: BIOVOL_UM3M3 title: "Biovolume of the taxa in um3 per cubic metre of water" type: number @@ -45,11 +49,13 @@ schema: - name: FOV_COUNT title: "Number of the taxa counted" type: number - required: true + constraints: + required: true - name: SAMPVOL_M3 title: "Volume of sample analysed (cubic metres)" type: number - required: true + constraints: + required: true primaryKey: - SAMPLE - TAXON_NAME diff --git a/cpr_data/cpr_samp.dataresource.yaml b/cpr_data/cpr_samp.dataresource.yaml index 81ce0be..2569650 100644 --- a/cpr_data/cpr_samp.dataresource.yaml +++ b/cpr_data/cpr_samp.dataresource.yaml @@ -13,19 +13,23 @@ schema: - name: TRIP_CODE title: "Unique identifier for trip" type: string - required: true + constraints: + required: true - name: SAMPLE title: "Unique sample identifier" type: string - required: true + constraints: + required: true - name: REGION title: "Region identifier" type: string - required: true + constraints: + required: true - name: LATITUDE title: "Latitude of sampling in decimal degrees North" type: number - required: true + constraints: + required: true minimum: -90 maximum: 90 - name: LONGITUDE @@ -33,14 +37,16 @@ schema: type: number minimum: -180 maximum: 180 - required: true + constraints: + required: true - name: SAMPLEDATEUTC title: "Date & time of sample in UTC time (formatted string)" type: datetime # format string *must* be specified using standard Python/C strptime specification # https://docs.python.org/2/library/datetime.html#strftime-strptime-behavior format: "%Y-%m-%d %H:%M:%S" - required: true + constraints: + required: true - name: SAMPLEDATELOCAL title: "Date & time of sample in local time (formatted string)" type: datetime @@ -59,7 +65,8 @@ schema: - name: SAMPLETYPE title: "sample type code" type: string - required: true + constraints: + required: true - name: GHRSST_6D_DEGC title: "IMOS L3S Day and Night gridded multiple-sensor multiple-swath Australian region HRPT AVHRR foundation SST" type: number diff --git a/cpr_data/cpr_zoop_changelog.dataresource.yaml b/cpr_data/cpr_zoop_changelog.dataresource.yaml index 03f7c9b..b703e05 100644 --- a/cpr_data/cpr_zoop_changelog.dataresource.yaml +++ b/cpr_data/cpr_zoop_changelog.dataresource.yaml @@ -13,12 +13,14 @@ schema: - name: TAXON_NAME title: "Taxonomic name that the species is currently identified as (post startdate)" type: string - required: true + constraints: + required: true - name: STARTDATE title: "Date from which the taxon_name was first consistently used (formatted string: YYYY-MM-DD)" type: date format: "%Y-%m-%d" - required: true + constraints: + required: true - name: PARENT_NAME title: "Taxon name which the species was known by before the start date" type: string diff --git a/cpr_data/cpr_zoop_raw.dataresource.yaml b/cpr_data/cpr_zoop_raw.dataresource.yaml index e183f97..7752eed 100644 --- a/cpr_data/cpr_zoop_raw.dataresource.yaml +++ b/cpr_data/cpr_zoop_raw.dataresource.yaml @@ -13,19 +13,23 @@ schema: - name: SAMPLE title: "Unique identifier for sample" type: string - required: true + constraints: + required: true - name: TAXON_NAME title: "Scientific name of taxa" type: string - required: true + constraints: + required: true - name: COPEPOD title: "Taxonomic flag value" type: string - required: true + constraints: + required: true - name: TAXON_GROUP title: "Functional group assigned to taxa" type: string - required: true + constraints: + required: true - name: GENUS title: "Genus name of taxa" type: string @@ -41,15 +45,18 @@ schema: - name: TAXON_COUNT title: "Number of the taxa counted" type: number - required: true + constraints: + required: true - name: SAMPVOL_M3 title: "Volume of sample analysed (cubic metres)" type: number - required: true + constraints: + required: true - name: ZOOP_ABUNDANCE_M3 title: "Abundance of the taxa per cubic metre of water" type: number - required: true + constraints: + required: true primaryKey: - SAMPLE