- takes a presence absence file of metagenomics and then sum the presence absence across the species and then divide it with the number of the gene ontology plus child categories included and presents you a ratio.
- The higher the ratio means that the ontology is distributed well across all the species.
pangenomeMetagenomicsNormalize("/Users/gauravsablok/Desktop/CodeCheck/csv_test_datasets/Pangenome.csv")
go_category effectsize
0 atp-dependent clp atp-binding subunit 34.50
1 dna a subunit 13.29
2 dna gyrase subunit b 11.50
3 phospho-2-dehydro-3-deoxyheptonate aldolase 17.40
4 6-phospho-beta-glucosidase 27.33
... ... ...
1656 nucleotidyltransferase domain 1.00
1657 sodium-dependent phosphate transporter 0.10
1658 adenine-specific dna-methyltransferase ed 0.25
Gaurav Sablok
University of Potsdam
Potsdam,Germany