From 79c5b022556f603ffa27f866ac3d989d8ecd7b5e Mon Sep 17 00:00:00 2001
From: Brent Pedersen <bpederse@gmail.com>
Date: Sat, 25 Apr 2020 12:00:48 -0600
Subject: [PATCH] closes #946

---
 gemini/gim.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gemini/gim.py b/gemini/gim.py
index 0bee2ce3..0dffb8b5 100644
--- a/gemini/gim.py
+++ b/gemini/gim.py
@@ -384,7 +384,7 @@ def query(self):
                     gt_ref_depths, gt_alt_depths, gt_quals" + \
                     " FROM variants " + \
                     " WHERE (%s) " % args.where
-        if args.filter: query += " AND " + args.filter
+        if args.filter: query += " AND (" + args.filter + ")"
         # we need to order results by gene so that we can sweep through the results
         return query + " ORDER BY chrom, gene"