From e5d6987e1808c933e90febfab3b98c5ad3066308 Mon Sep 17 00:00:00 2001 From: LindoNkambule Date: Fri, 14 Jun 2024 15:34:50 -0400 Subject: [PATCH] temporarily increase storage buffer This is temporary, I increased the buffer to handle large target datasets (10K+ samples). Working on finding an automatic way of estimating storage. --- gwaspy/imputation/impute5_impute.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gwaspy/imputation/impute5_impute.py b/gwaspy/imputation/impute5_impute.py index 0ddc96d..952ca3a 100644 --- a/gwaspy/imputation/impute5_impute.py +++ b/gwaspy/imputation/impute5_impute.py @@ -163,7 +163,7 @@ def concatenate_imputed_chunks( ] # Concatenate imputed chunks - disk_size = int(round(20.0 + 3.0 * vcf_size + ((1.0 + 2.0 * n_samples/n_panel_samples) * ref_size))) + disk_size = int(round(130.0 + 3.0 * vcf_size + ((1.0 + 2.0 * n_samples/n_panel_samples) * ref_size))) concatenate_imputed_chunks( b=batch, chunks_list=imputed_chunks,