.pre-commit-config.yaml

default_language_version:
  node: system
repos:
- repo: local
  hooks:
    - id: verify-config
      name: Verify config file
      description: Verify config file to check if certain parameters are empty
      entry: scripts/verify-config.sh
      verbose: true
      language: script
      files: config.yaml

- repo: https://github.com/PyCQA/bandit
  rev: '1.7.5'
  hooks:
    - id: bandit
      args: [--recursive, -c=pyproject.toml]
      additional_dependencies: ['bandit[toml]']

- repo: https://github.com/Yelp/detect-secrets
  rev: v1.4.0
  hooks:
    - id: detect-secrets
      exclude: (?x)^(
        .*.ipynb|config.yaml
        )$

- repo: https://github.com/pre-commit/pre-commit-hooks
  rev: v4.5.0
  hooks:
    - id: check-json
    - id: check-yaml
    - id: check-case-conflict
    - id: mixed-line-ending
      args: ['--fix=lf']
    - id: fix-byte-order-marker
    - id: check-merge-conflict
    - id: detect-private-key
    - id: end-of-file-fixer
    - id: trailing-whitespace

- repo: https://github.com/codespell-project/codespell
  rev: v2.2.6
  hooks:
    - id: codespell
      entry: codespell
      args: ['--skip=*.git*,*cdk.out*,*venv*,*mypy_cache*,*package-lock*,*node_modules*,*dist/*,*poetry.lock*,*coverage*,*models/*', "-L=xdescribe"]
      pass_filenames: false

- repo: https://github.com/pycqa/isort
  rev: 5.12.0
  hooks:
    - id: isort
      name: isort (python)

- repo: https://github.com/ambv/black
  rev: '23.10.1'
  hooks:
    - id: black

- repo: https://github.com/charliermarsh/ruff-pre-commit
  rev: 'v0.1.3'
  hooks:
    - id: ruff
      args: [--exit-non-zero-on-fix]

- repo: https://github.com/pycqa/flake8
  rev: '6.1.0'
  hooks:
    - id: flake8
      additional_dependencies:
        - flake8-docstrings
        - flake8-broken-line
        - flake8-bugbear
        - flake8-comprehensions
        - flake8-debugger
        - flake8-string-format
      args:
        - --docstring-convention=numpy
        - --max-line-length=120
        - --extend-immutable-calls=Query,fastapi.Depends,fastapi.params.Depends
        - --ignore=B008 # Ignore error for function calls in argument defaults
      exclude: ^(__init__.py$|.*\/__init__.py$)


- repo: https://github.com/pre-commit/mirrors-mypy
  rev: 'v1.6.1'
  hooks:
    - id: mypy
      verbose: true
      # mypy currently fails on the gitlab runner and also fails locally due to the mono
      # repo nature of LISA and two "api" modules. This command will make it so mypy
      # issues are reported but non-blocking
      entry: bash -c 'mypy "$@" || true' --
      args:
        - --config-file=pyproject.toml
        - --install-types
        - --non-interactive
      exclude: ^test

- repo: https://github.com/pre-commit/mirrors-eslint
  rev: 'v8.53.0'
  hooks:
    - id: eslint
      files: \.[jt]sx?$
      types: [file]
      args:
        - --max-warnings=10
        - --fix

- repo: https://github.com/Lucas-C/pre-commit-hooks
  rev: v1.5.5
  hooks:
    - id: insert-license
      files: \.[jt]sx?$  # *.js, *.jsx, *.ts and *.tsx
      args:
        - --license-filepath
        - .precommit-license-header.txt        # defaults to: LICENSE.txt
        - --comment-style
        - /**| |*/        # defaults to:  #

- repo: https://github.com/Lucas-C/pre-commit-hooks
  rev: v1.5.5
  hooks:
    - id: insert-license
      files: \.py$
      args:
        - --license-filepath
        - .precommit-license-header.txt        # defaults to: LICENSE.txt
        - --comment-style
        - "#  "        # defaults to:  #