overview

FAIR sharing of molecular visualization experiences - overview

This page is an inventory of all media, data, code examples and instructions related to our preprint on biorxiv which lay the foundation for a Zenodo community and a figshare collection on FAIR sharing of molecular visualization experiences.

Collections and communities

Item	Link
Zenodo community incorporating all media, models, codes, executables etc.	Zenodo
figshare collection incorporating all elements deposited via figshare	Figshare

Media

Type	Description	Link(s)
Image	Five simple structural views (still images) of the SARS spike glycoprotein complex with human angiotensin-converting enzyme 2 (ACE2)	figshare
Image	Screen captures illustrating molecular 3D model sharing through Sketchfab, Google Poly and NIH Print Exchange
Image	Screen captures illustrating example 4 (bioinformatics data mapping on a 3D structure)
Image	Screen captures illustrating and depicting EM densities of the ACE2 (PDB ID 6CS2) model
Movie	Animation of drug molecules binding to Covid-19 main protease
Movie	Tutorial on annotations
Movie	Tutorial on tour functionality
360 Movie	UnityMol 360 degree video with a camera path through the COVID19 spike protein-ACE2 complex	youtube
Movie	UnityMol tutorial video on generating 360 degree videos
Movie	UnityMol tutorial video showing custom user-added menus

Models

Item	Description	Link(s)
3D Model (fbx)	A 3D model of the spike-ACE2 interaction exported from UnityMol. The raw fbx file can be downloaded, or the 3D model can be directly viewed on Google Poly or on Sketchfab. This also allows viewing in AR/VR with various devices	Google_Poly Sketchfab
Printable Model (stl)	A 3D model and related files for 3D printing of the SARS-CoV-2 main protease monomer	NIH_Print_Exchange

Code and executables

Item	Link
UnityMol scripts and required files to reproduce the examples described in our paper
UnityMol 1.1.1 executable build for MacOSX to run the above scripts
UnityMol 1.1.1 executable build for Windows 64 to run the above scripts
UnityMol 1.1.3beta executable build for Windows 64 Virtual Reality to run the above scripts
More executable builds to run the above scripts	(to come)
UnityMol source code release of related versions	(to come)

Documents

Item	Link
Preprint of the paper underlying this repository available from biorxiv
Practical UnityMol Tutorial updated for this work
Documentation on how to create the various media and models above with UnityMol	(to come once the code is stabilized)

License

The whole data collection including this file is under the CC-BY International license, see the LICENSE file for details.

Contact

For questions, bugs, suggestions, and further inquiries, please leave an issue here or send the corresponding author an email at baaden [at] smplinux [dot] de