From e11c61c1d33d9227180e4a5c265fb2a700f1e395 Mon Sep 17 00:00:00 2001
From: Mauricio Barahona <m.barahona@imperial.ac.uk>
Date: Sat, 9 Mar 2024 20:46:23 +0000
Subject: [PATCH 1/2] Update README.md

---
 README.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/README.md b/README.md
index 6af6410..892b97e 100755
--- a/README.md
+++ b/README.md
@@ -6,6 +6,8 @@
 [![License](https://img.shields.io/badge/License-GPLv3-blue)](https://github.com/barahona-research-group/PyGenStability/blob/master/LICENSE)
 [![DOI](https://zenodo.org/badge/183625721.svg)](https://zenodo.org/badge/latestdoi/183625721)
 
+[![Downloads](https://static.pepy.tech/badge/pygenstability)](https://pepy.tech/project/pygenstability)
+[![Downloads](https://static.pepy.tech/badge/pygenstability/month)](https://pepy.tech/project/pygenstability)
 
 # *PyGenStability*
 

From 53946dae85c8baa8151fcec12b50ee63e61a47ca Mon Sep 17 00:00:00 2001
From: arnaudon <alexis.arnaudon@epfl.ch>
Date: Mon, 11 Mar 2024 09:26:03 +0100
Subject: [PATCH 2/2] Fix formating

---
 src/pygenstability/__init__.py       | 1 +
 src/pygenstability/app.py            | 1 +
 src/pygenstability/constructors.py   | 1 +
 src/pygenstability/contrib/sankey.py | 1 +
 src/pygenstability/io.py             | 1 +
 src/pygenstability/optimal_scales.py | 1 +
 src/pygenstability/plotting.py       | 1 +
 src/pygenstability/pygenstability.py | 1 +
 8 files changed, 8 insertions(+)

diff --git a/src/pygenstability/__init__.py b/src/pygenstability/__init__.py
index 36f62b5..2e6ee8c 100644
--- a/src/pygenstability/__init__.py
+++ b/src/pygenstability/__init__.py
@@ -1,4 +1,5 @@
 """Import main functions."""
+
 from pygenstability.constructors import *
 from pygenstability.io import load_results
 from pygenstability.io import save_results
diff --git a/src/pygenstability/app.py b/src/pygenstability/app.py
index 6fd1d17..ed941e7 100644
--- a/src/pygenstability/app.py
+++ b/src/pygenstability/app.py
@@ -1,4 +1,5 @@
 """Command line interface."""
+
 import pickle
 from pathlib import Path
 
diff --git a/src/pygenstability/constructors.py b/src/pygenstability/constructors.py
index ee6aba5..743d2ca 100644
--- a/src/pygenstability/constructors.py
+++ b/src/pygenstability/constructors.py
@@ -13,6 +13,7 @@
 :math:`\boldsymbol{1}` is the vector of ones, and we denote the diagonal degree matrix by
 :math:`D=\mathrm{diag}(d)`.
 """
+
 import logging
 import sys
 
diff --git a/src/pygenstability/contrib/sankey.py b/src/pygenstability/contrib/sankey.py
index 45f9407..6e83ef9 100644
--- a/src/pygenstability/contrib/sankey.py
+++ b/src/pygenstability/contrib/sankey.py
@@ -1,4 +1,5 @@
 """Sankey diagram plots."""
+
 import numpy as np  # pragma: no cover
 import plotly.graph_objects as go  # pragma: no cover
 from plotly.offline import plot  # pragma: no cover
diff --git a/src/pygenstability/io.py b/src/pygenstability/io.py
index 34af04e..5250aae 100644
--- a/src/pygenstability/io.py
+++ b/src/pygenstability/io.py
@@ -1,4 +1,5 @@
 """I/O functions."""
+
 import pickle
 
 
diff --git a/src/pygenstability/optimal_scales.py b/src/pygenstability/optimal_scales.py
index efa3a79..be1a267 100644
--- a/src/pygenstability/optimal_scales.py
+++ b/src/pygenstability/optimal_scales.py
@@ -1,4 +1,5 @@
 """Detect optimal scales from a scale scan."""
+
 import numpy as np
 import pandas as pd
 from numpy.lib.stride_tricks import as_strided
diff --git a/src/pygenstability/plotting.py b/src/pygenstability/plotting.py
index ee4f19f..74a0451 100644
--- a/src/pygenstability/plotting.py
+++ b/src/pygenstability/plotting.py
@@ -1,4 +1,5 @@
 """Plotting functions."""
+
 import logging
 import os
 
diff --git a/src/pygenstability/pygenstability.py b/src/pygenstability/pygenstability.py
index 0eda967..d526655 100644
--- a/src/pygenstability/pygenstability.py
+++ b/src/pygenstability/pygenstability.py
@@ -11,6 +11,7 @@
 Markov Stability setting, and can be parametrised via built-in constructors, or specified by
 the user via the constructor module.
 """
+
 import itertools
 import logging
 import multiprocessing