diff --git a/.DS_Store b/.DS_Store
index a0e8608..9a44359 100644
Binary files a/.DS_Store and b/.DS_Store differ
diff --git a/SASHIMISegmentation-v1.1.prj b/SASHIMISegmentation-v1.1.prj
deleted file mode 100644
index 0e8320e..0000000
--- a/SASHIMISegmentation-v1.1.prj
+++ /dev/null
@@ -1,122 +0,0 @@
-<deployment-project plugin="plugin.ezdeploy" plugin-version="1.0">
-  <configuration file="/Users/brianchow/Documents/GitHub/SASHIMI/SASHIMISegmentation-v1.1.prj" location="/Users/brianchow/Documents/GitHub/SASHIMI" name="SASHIMISegmentation-v1.1" target="target.ezdeploy.standalone" target-name="Application Compiler">
-    <param.appname>SASHIMI_Segmentation</param.appname>
-    <param.icon />
-    <param.icons />
-    <param.version>1.1</param.version>
-    <param.authnamewatermark>Bart Bolsterlee</param.authnamewatermark>
-    <param.email>b.bolsterlee@neura.edu.au</param.email>
-    <param.company>NeuRA</param.company>
-    <param.summary />
-    <param.description />
-    <param.screenshot>${PROJECT_ROOT}/sashimi-logo.png</param.screenshot>
-    <param.guid />
-    <param.installpath.string>/NeuRA/SASHIMI_Segmentation/</param.installpath.string>
-    <param.installpath.combo>option.installpath.systemwideapp</param.installpath.combo>
-    <param.logo>${PROJECT_ROOT}/sashimi-logo.png</param.logo>
-    <param.install.notes />
-    <param.target.install.notes>In the following directions, replace MR/v97 by the directory on the target machine where MATLAB is installed, or MR by the directory where the MATLAB Runtime is installed.
-
-If the environment variable DYLD_LIBRARY_PATH is undefined, set it to the following string:
-
-MR/v97/runtime/maci64:MR/v97/sys/os/maci64:MR/v97/bin/maci64
-
-If it is defined, set it to the following:
-
-${DYLD_LIBRARY_PATH}:MR/v97/runtime/maci64:MR/v97/sys/os/maci64:MR/v97/bin/maci64</param.target.install.notes>
-    <param.intermediate>${PROJECT_ROOT}/SASHIMISegmentation-v1.1/for_testing</param.intermediate>
-    <param.files.only>${PROJECT_ROOT}/SASHIMISegmentation-v1.1/for_redistribution_files_only</param.files.only>
-    <param.output>${PROJECT_ROOT}/SASHIMISegmentation-v1.1/for_redistribution</param.output>
-    <param.logdir>${PROJECT_ROOT}/SASHIMISegmentation-v1.1</param.logdir>
-    <param.enable.clean.build>false</param.enable.clean.build>
-    <param.user.defined.mcr.options />
-    <param.target.type>subtarget.standalone</param.target.type>
-    <param.support.packages />
-    <param.web.mcr>true</param.web.mcr>
-    <param.package.mcr>false</param.package.mcr>
-    <param.no.mcr>false</param.no.mcr>
-    <param.web.mcr.name>MyAppInstaller_web</param.web.mcr.name>
-    <param.package.mcr.name>MyAppInstaller_mcr</param.package.mcr.name>
-    <param.no.mcr.name>MyAppInstaller_app</param.no.mcr.name>
-    <param.windows.command.prompt>false</param.windows.command.prompt>
-    <param.create.log>false</param.create.log>
-    <param.log.file />
-    <param.native.matlab>false</param.native.matlab>
-    <param.checkbox>false</param.checkbox>
-    <param.example />
-    <param.help.text>Syntax 
-	  -? 
-	 
- Input Arguments 
-	 -?  print help on how to use the application 
-	 input arguments</param.help.text>
-    <unset>
-      <param.icon />
-      <param.icons />
-      <param.summary />
-      <param.description />
-      <param.guid />
-      <param.installpath.string />
-      <param.installpath.combo />
-      <param.install.notes />
-      <param.intermediate />
-      <param.files.only />
-      <param.output />
-      <param.logdir />
-      <param.enable.clean.build />
-      <param.user.defined.mcr.options />
-      <param.target.type />
-      <param.support.packages />
-      <param.web.mcr />
-      <param.package.mcr />
-      <param.no.mcr />
-      <param.web.mcr.name />
-      <param.package.mcr.name />
-      <param.no.mcr.name />
-      <param.windows.command.prompt />
-      <param.create.log />
-      <param.log.file />
-      <param.native.matlab />
-      <param.checkbox />
-      <param.example />
-    </unset>
-    <fileset.main>
-      <file>${PROJECT_ROOT}/SASHIMI_v1_1.mlapp</file>
-    </fileset.main>
-    <fileset.resources />
-    <fileset.package />
-    <fileset.depfun>
-      <file>${PROJECT_ROOT}/convertObjects.m</file>
-      <file>${PROJECT_ROOT}/fit_spline.m</file>
-      <file>${PROJECT_ROOT}/register_slices.m</file>
-      <file>${PROJECT_ROOT}/sashimi-logo.png</file>
-      <file>${PROJECT_ROOT}/snap_to_edge.m</file>
-    </fileset.depfun>
-    <build-deliverables>
-      <file location="${PROJECT_ROOT}/SASHIMISegmentation-v1.1/for_testing" name="SASHIMI_Segmentation.app" optional="false">/Users/brianchow/Documents/GitHub/SASHIMI/SASHIMISegmentation-v1.1/for_testing/SASHIMI_Segmentation.app</file>
-      <file location="${PROJECT_ROOT}/SASHIMISegmentation-v1.1/for_testing" name="splash.png" optional="false">/Users/brianchow/Documents/GitHub/SASHIMI/SASHIMISegmentation-v1.1/for_testing/splash.png</file>
-      <file location="${PROJECT_ROOT}/SASHIMISegmentation-v1.1/for_testing" name="run_SASHIMI_Segmentation.sh" optional="false">/Users/brianchow/Documents/GitHub/SASHIMI/SASHIMISegmentation-v1.1/for_testing/run_SASHIMI_Segmentation.sh</file>
-      <file location="${PROJECT_ROOT}/SASHIMISegmentation-v1.1/for_testing" name="readme.txt" optional="true">/Users/brianchow/Documents/GitHub/SASHIMI/SASHIMISegmentation-v1.1/for_testing/readme.txt</file>
-    </build-deliverables>
-    <workflow />
-    <matlab>
-      <root>/Applications/MATLAB_R2019b.app</root>
-      <toolboxes />
-    </matlab>
-    <platform>
-      <unix>true</unix>
-      <mac>true</mac>
-      <windows>false</windows>
-      <win2k>false</win2k>
-      <winxp>false</winxp>
-      <vista>false</vista>
-      <linux>false</linux>
-      <solaris>false</solaris>
-      <osver>10.15.4</osver>
-      <os32>false</os32>
-      <os64>true</os64>
-      <arch>maci64</arch>
-      <matlab>true</matlab>
-    </platform>
-  </configuration>
-</deployment-project>
\ No newline at end of file
diff --git a/standalone/.DS_Store b/standalone/.DS_Store
index 0beb5b8..034575b 100644
Binary files a/standalone/.DS_Store and b/standalone/.DS_Store differ
diff --git a/standalone/MacOS/.DS_Store b/standalone/MacOS/.DS_Store
index 00a3206..ab940a2 100644
Binary files a/standalone/MacOS/.DS_Store and b/standalone/MacOS/.DS_Store differ
diff --git a/standalone/MacOS/SASHIMI_Segmentation.app/Contents/MacOS/SASHIMI_Segmentation b/standalone/MacOS/SASHIMI_Segmentation.app/Contents/MacOS/SASHIMI_Segmentation
index 1d7d433..ded5207 100755
Binary files a/standalone/MacOS/SASHIMI_Segmentation.app/Contents/MacOS/SASHIMI_Segmentation and b/standalone/MacOS/SASHIMI_Segmentation.app/Contents/MacOS/SASHIMI_Segmentation differ
diff --git a/standalone/MacOS/SASHIMI_Segmentation.app/Contents/Resources/membrane.icns b/standalone/MacOS/SASHIMI_Segmentation.app/Contents/Resources/membrane.icns
old mode 100755
new mode 100644
index 8f10702..d054197
Binary files a/standalone/MacOS/SASHIMI_Segmentation.app/Contents/Resources/membrane.icns and b/standalone/MacOS/SASHIMI_Segmentation.app/Contents/Resources/membrane.icns differ