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gpq.hmm
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HMMER3/f [3.3.1 | Jul 2020]
NAME gpq
LENG 36
ALPH amino
RF no
MM no
CONS yes
CS no
MAP yes
DATE Tue Jan 31 14:25:44 2023
NSEQ 55
EFFN 1.641541
CKSUM 1042771254
STATS LOCAL MSV -7.5464 0.71962
STATS LOCAL VITERBI -7.9987 0.71962
STATS LOCAL FORWARD -4.3014 0.71962
HMM A C D E F G H I K L M N P Q R S T V W Y
m->m m->i m->d i->m i->i d->m d->d
COMPO 2.43651 3.05023 3.76329 3.42265 3.06726 3.21571 3.84749 2.36363 2.66873 1.84920 3.08597 3.34813 4.38796 3.51706 3.02655 3.20842 3.32277 2.73027 3.06769 3.86666
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01682 4.48966 5.21201 0.61958 0.77255 0.00000 *
1 3.60153 5.07021 4.80427 4.49045 3.66653 4.35819 5.08317 2.91605 4.22053 2.20067 0.54876 4.67878 4.85718 4.57656 4.34335 3.99366 3.93818 2.98820 5.55844 4.36378 1 M - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01682 4.48966 5.21201 0.61958 0.77255 0.48576 0.95510
2 3.68908 5.57343 3.90168 3.45570 5.11211 4.05433 4.28701 4.59856 0.42491 4.04329 5.01007 3.83549 4.54224 3.47081 2.77431 3.71406 3.91321 4.28584 5.93327 4.86395 2 K - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01682 4.48966 5.21201 0.61958 0.77255 0.48576 0.95510
3 2.90105 4.62796 3.81195 3.39475 3.28918 3.73242 4.09605 3.22940 3.29422 2.91824 3.91152 3.68215 4.25188 3.63860 3.57637 3.10896 1.21764 2.99972 4.85612 1.83758 3 t - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.08469 4.48966 2.65953 0.61958 0.77255 0.48576 0.95510
4 1.23655 4.44196 4.04124 3.58599 3.73935 3.61927 4.40646 2.83502 3.47158 2.55932 1.87606 3.79607 4.19501 3.78586 3.72858 3.01184 3.09728 2.65695 5.34477 4.14150 4 a - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.58943 0.80888
5 3.42666 4.71716 5.15115 4.65091 1.73712 4.67178 4.78328 1.08485 4.50765 1.93497 3.30601 4.73461 4.92426 4.59102 4.57239 4.04758 3.66591 2.23995 5.02703 3.61931 5 i - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.58943 0.80888
6 3.46379 4.76048 5.11939 4.63364 1.23628 4.65189 4.62841 1.47872 4.48336 1.93328 3.31088 4.68420 4.91002 4.54668 4.53830 4.02683 3.70153 2.38953 4.84755 3.37178 6 f - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.58943 0.80888
7 3.56272 4.80794 5.38775 4.86927 3.45626 4.96526 5.38908 1.02577 4.71723 1.20955 3.23737 5.07270 5.12977 4.82528 4.80050 4.36874 3.79941 2.08177 5.59410 4.49525 7 i - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.58943 0.80888
8 3.84159 5.15918 5.07619 4.75094 3.44961 4.67909 5.24284 2.70968 4.51953 0.40800 3.35590 4.97870 5.04027 4.74696 4.59181 4.37056 4.12088 2.88340 5.49062 4.33096 8 L - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.58943 0.80888
9 1.26003 4.45717 4.33757 3.89695 3.81065 3.85149 4.67267 1.50185 3.79893 2.56681 3.71069 4.06812 4.40172 4.09082 4.03098 3.25538 3.22015 2.18837 5.49760 4.28701 9 a - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.58943 0.80888
10 1.74500 4.44586 4.56039 4.07334 3.82444 4.04816 4.80173 2.04311 3.97495 2.55576 3.69360 4.23890 4.53942 4.24784 4.19734 3.43349 3.27303 1.06083 5.54750 4.33778 10 v - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.58943 0.80888
11 3.65944 4.96134 5.26163 4.71042 3.22410 4.89661 5.18268 2.43077 4.50225 1.04457 1.23406 4.95742 5.03808 4.58579 4.57364 4.27917 3.87839 2.63365 5.37673 4.32994 11 l - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.58943 0.80888
12 3.46379 4.76048 5.11939 4.63364 1.23628 4.65189 4.62841 1.47872 4.48336 1.93328 3.31088 4.68420 4.91002 4.54668 4.53830 4.02683 3.70153 2.38953 4.84755 3.37178 12 f - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.42600 1.05877
13 0.40134 4.63302 4.22608 4.09793 4.80363 3.43322 5.02426 4.03709 4.13459 3.88348 4.87361 4.04834 4.23213 4.41831 4.30660 2.99297 3.31467 3.56931 6.15591 5.05053 13 A - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01682 4.48966 5.21201 0.61958 0.77255 0.48576 0.95510
14 1.38703 4.46268 4.57343 4.05995 3.78269 4.12126 4.76428 1.90296 3.96472 2.53561 3.66105 4.25085 4.57077 4.22645 4.18673 3.48545 3.29086 1.38492 5.48806 4.28289 14 v - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01682 4.48966 5.21201 0.61958 0.77255 0.48576 0.95510
15 3.93447 5.23636 5.18404 4.86615 3.50241 4.76468 5.34079 2.77059 4.63706 0.37170 3.39970 5.09016 5.11917 4.84542 4.69546 4.47789 4.21267 2.95985 5.55804 4.41179 15 L - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01682 4.48966 5.21201 0.61958 0.77255 0.48576 0.95510
16 3.55090 4.90932 4.87296 4.40594 2.94741 4.59576 4.50186 2.73054 4.17213 0.64966 3.31807 4.53896 4.87112 4.35844 4.27896 3.97821 3.78058 2.83937 4.77692 2.55181 16 L - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01682 4.48966 5.21201 0.61958 0.77255 0.48576 0.95510
17 4.53954 5.65434 5.13638 5.01972 3.56358 4.51941 4.86129 4.65571 4.77318 3.92390 5.24848 5.07016 5.09147 5.12155 4.77672 4.73891 4.87980 4.55672 0.22222 3.54111 17 W - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01682 4.48966 5.21201 0.61958 0.77255 0.48576 0.95510
18 3.84159 5.15918 5.07619 4.75094 3.44961 4.67909 5.24284 2.70968 4.51953 0.40800 3.35590 4.97870 5.04027 4.74696 4.59181 4.37056 4.12088 2.88340 5.49062 4.33096 18 L - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.48576 0.95510
19 3.00248 5.02254 3.16762 2.96137 4.32958 1.12466 1.69903 4.17579 3.07056 3.74248 4.62609 3.40493 4.17183 3.46395 3.42762 3.07463 3.36444 3.76758 5.64908 4.26618 19 g - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01799 4.42296 5.14530 0.61958 0.77255 0.48576 0.95510
20 3.75322 5.48170 4.30970 3.74437 4.98623 4.08630 4.39001 4.60087 2.67586 4.01502 5.02820 4.04689 4.58744 3.60778 0.39068 3.82931 3.99756 4.30662 5.85805 4.82750 20 R - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.02725 4.42296 4.20758 0.61958 0.77255 0.48576 0.95510
21 3.26072 5.92863 1.40261 1.04334 5.20914 3.44200 4.03450 4.76840 3.11474 4.23094 5.09976 2.89362 4.09423 3.20618 3.75864 3.11241 3.56013 4.31028 6.36610 4.81400 21 e - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01815 4.41386 5.13621 0.61958 0.77255 0.50000 0.93275
22 3.19219 5.35623 3.33672 2.85830 4.53503 3.77688 1.42099 4.16395 1.45491 3.62035 4.48974 3.30896 4.19501 2.99796 2.48825 3.17749 3.38883 3.83249 5.58406 4.28300 22 h - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01815 4.41386 5.13621 0.61958 0.77255 0.50000 0.93275
23 3.36642 0.29226 4.94610 4.82972 4.75136 3.84401 5.36568 4.03259 4.68112 3.89909 5.04749 4.68813 4.58500 5.00382 4.69650 3.63469 3.87865 3.72791 6.00226 5.02471 23 C - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01815 4.41386 5.13621 0.61958 0.77255 0.50000 0.93275
24 3.48883 4.79938 5.05091 4.71345 3.80670 4.61633 5.37603 0.58167 4.55686 2.31284 3.68978 4.89144 5.02516 4.86866 4.69777 4.19534 3.78942 2.01326 5.78635 4.55402 24 I - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.02747 4.41386 4.20045 0.61958 0.77255 0.50000 0.93275
25 3.81649 5.13841 5.04664 4.71945 3.43569 4.65570 5.21620 2.69353 4.48752 0.41851 3.34456 4.94833 5.01878 4.72010 4.56358 4.34146 4.09608 2.86296 5.47251 4.30917 25 L - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01832 4.40471 5.12705 0.61958 0.77255 0.51399 0.91156
26 3.35084 0.29808 4.93086 4.81192 4.73358 3.83134 5.34951 4.01148 4.66241 3.87936 5.02723 4.67193 4.57199 4.98557 4.67979 3.61921 3.86238 3.70790 5.98820 5.00734 26 C - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01832 4.40471 5.12705 0.61958 0.77255 0.51399 0.91156
27 3.17325 5.41147 3.29642 2.80265 4.83883 3.75553 3.80677 4.23819 1.44341 3.66598 4.51790 3.26209 4.16578 1.34706 2.42322 3.14194 3.36325 3.88709 5.71058 4.48045 27 q - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01832 4.40471 5.12705 0.61958 0.77255 0.51399 0.91156
28 4.36074 5.51534 4.98780 4.84594 3.41422 4.40373 4.71092 4.45473 4.58765 3.74221 5.05505 4.90466 4.96892 4.94290 4.60986 4.55988 4.69498 4.35576 0.26780 3.39420 28 W - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01832 4.40471 5.12705 0.61958 0.77255 0.51399 0.91156
29 1.62160 4.49421 4.22591 3.82261 1.27896 3.75090 4.28372 2.91174 3.75071 2.56682 3.69898 3.93962 4.30985 3.97630 3.95016 3.15998 3.22309 2.74898 4.84045 3.36146 29 f - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01832 4.40471 5.12705 0.61958 0.77255 0.51399 0.91156
30 3.56857 5.47529 3.77608 3.33544 4.99088 3.95770 4.19056 4.46649 0.48653 3.92724 4.88978 3.72324 4.44454 3.37292 2.69956 3.59362 3.79541 4.15534 5.84322 4.75368 30 K - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01832 4.40471 5.12705 0.61958 0.77255 0.51399 0.91156
31 2.87322 4.94391 3.45963 2.95434 4.56697 3.55687 3.94903 4.01259 2.44201 3.55513 4.40214 3.34720 4.08036 3.11300 1.25275 1.70107 3.18282 3.61431 5.66367 4.41624 31 r - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01832 4.40471 5.12705 0.61958 0.77255 0.51399 0.91156
32 3.54866 4.79649 5.36505 4.84558 3.44203 4.94592 5.36610 1.04715 4.69279 1.19842 3.22436 5.05038 5.11242 4.80291 4.77781 4.34777 3.78518 2.07735 5.57652 4.47702 32 i - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01832 4.40471 5.12705 0.61958 0.77255 0.49103 0.94674
33 2.65026 4.45225 3.70710 3.26116 3.83746 3.49071 4.19967 3.10612 3.17992 1.71790 3.81748 3.55235 4.06584 3.52349 3.48849 1.36929 2.80606 2.85453 5.32324 4.07653 33 s - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01815 4.41386 5.13621 0.61958 0.77255 0.50000 0.93275
34 3.29879 5.25245 3.18183 3.13841 4.71714 3.65411 4.52420 4.58780 3.49965 4.17495 5.15308 0.47360 4.34478 3.82695 3.84885 3.36242 3.71495 4.14916 5.95396 4.64894 34 N - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01815 4.41386 5.13621 0.61958 0.77255 0.50000 0.93275
35 2.94104 5.06202 2.99090 2.78524 4.69373 1.22476 4.11462 4.21690 2.89000 3.77047 4.62735 3.25807 4.09651 1.66420 3.26093 2.98521 3.29190 3.78288 5.87495 4.56791 35 g - - -
2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
0.01815 4.41386 5.13621 0.61958 0.77255 0.50000 0.93275
36 1.04398 4.35509 3.91843 3.60240 4.53171 1.58443 4.57748 3.85861 3.61399 3.62068 4.46292 3.64960 3.94544 3.87921 3.89273 2.63480 2.94047 2.93876 5.90635 4.72069 36 a - - -
2.68623 4.42230 2.77525 2.73128 3.46359 2.40459 3.72500 3.29359 2.67746 2.69360 4.24695 2.90352 2.73745 3.18152 2.89806 2.37892 2.77525 2.98524 4.58482 3.61508
0.28376 1.39815 * 0.17611 1.82341 0.00000 *
//