diff --git a/inst/rmarkdown/templates/rnaseq/skeleton/QC/params_qc_nf-core.R b/inst/rmarkdown/templates/rnaseq/skeleton/QC/params_qc_nf-core.R index fd75d18..08b3ec0 100644 --- a/inst/rmarkdown/templates/rnaseq/skeleton/QC/params_qc_nf-core.R +++ b/inst/rmarkdown/templates/rnaseq/skeleton/QC/params_qc_nf-core.R @@ -6,6 +6,6 @@ metadata_fn='/Path/to/metadata/meta.csv' # This file is inside star_salmon/ folder se_object='/path/to/nf-core/output/star_salmon/salmon.merged.gene_counts.rds' # This folder called "multiqc_report_data" is inside the output directory star_salmon inside multiqc folder -multiqc_data_dir='/path/to/nf-core/output/star_salmon/multiqc_report_data' +multiqc_data_dir='/path/to/nf-core/output/multiqc/star_salmon/multiqc_report_data' # This file is inside the genome folder in the output directory, use this only for non-model organism # gtf_fn='/path/to/nf-core/output/genome/hg38.filtered.gtf'