diff --git a/inst/templates/rnaseq/DE/DEG.Rmd b/inst/templates/rnaseq/DE/DEG.Rmd index 11a5844..edfcecf 100644 --- a/inst/templates/rnaseq/DE/DEG.Rmd +++ b/inst/templates/rnaseq/DE/DEG.Rmd @@ -197,7 +197,7 @@ pca <- degPCA(norm_matrix, metrics, pca$plot + ggtitle(paste0("All samples", "\nPCA using ", nrow(vsd_before), " genes")) + theme(plot.title=element_text(hjust=0.5)) + - geom_mark_ellipse(aes(color = sample_type)) + scale_color_cb_friendly() + geom_mark_ellipse(aes(color = .data[[column]])) + scale_color_cb_friendly() ``` ## Analysis of the variance by group