diff --git a/ChangeLog b/ChangeLog index 4f93b2d74..d88c881d9 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,3 +1,19 @@ +2014-05-07 Anthony Raymond + + * Release version 1.5.1 + * Fix an issue with strand-specific RNA-Seq assembly when running + `abyss-filtergraph --assemble --SS`. + * Portability fixes for Fujitsu C Compiler (FCC). + + abyss-filtergraph: + * Assemble contigs in forward orientation with `--assemble --SS` + + abyss-pe: + * Fix some cases where abyss-pe uses incorrect executables + + ABYSS-P: + * Portability fix with FCC + 2014-05-01 Anthony Raymond * Release version 1.5.0 diff --git a/bin/abyss-pe b/bin/abyss-pe index d7d462a76..be90c362e 100755 --- a/bin/abyss-pe +++ b/bin/abyss-pe @@ -263,7 +263,7 @@ Report bugs to .\n' version: @printf '\ -abyss-pe (ABySS) 1.5.0\n\ +abyss-pe (ABySS) 1.5.1\n\ Written by Shaun Jackman and Anthony Raymond.\n\ \n\ Copyright 2012 Canada'\''s Michael Smith Genome Science Centre\n' diff --git a/configure.ac b/configure.ac index beb7efbd9..dfeb434bb 100644 --- a/configure.ac +++ b/configure.ac @@ -1,5 +1,5 @@ AC_PREREQ(2.62) -AC_INIT(ABySS, 1.5.0, abyss-users@bcgsc.ca, abyss, +AC_INIT(ABySS, 1.5.1, abyss-users@bcgsc.ca, abyss, http://www.bcgsc.ca/platform/bioinfo/software/abyss) AM_INIT_AUTOMAKE(1.9.6 foreign subdir-objects) AC_CONFIG_SRCDIR([ABYSS/Abyss.cpp]) diff --git a/doc/ABYSS.1 b/doc/ABYSS.1 index 461a737b5..b436fd1dd 100644 --- a/doc/ABYSS.1 +++ b/doc/ABYSS.1 @@ -1,4 +1,4 @@ -.TH ABYSS "1" "2014-May" "ABYSS (ABySS) 1.5.0" "User Commands" +.TH ABYSS "1" "2014-May" "ABYSS (ABySS) 1.5.1" "User Commands" .SH NAME ABYSS \- assemble short reads into contigs .SH SYNOPSIS diff --git a/doc/abyss-pe.1 b/doc/abyss-pe.1 index 8960eaea8..1c288bed8 100644 --- a/doc/abyss-pe.1 +++ b/doc/abyss-pe.1 @@ -1,4 +1,4 @@ -.TH abyss-pe "1" "2014-May" "abyss-pe (ABySS) 1.5.0" "User Commands" +.TH abyss-pe "1" "2014-May" "abyss-pe (ABySS) 1.5.1" "User Commands" .SH NAME abyss-pe - assemble reads into contigs .SH SYNOPSIS diff --git a/doc/abyss-tofastq.1 b/doc/abyss-tofastq.1 index 68d553f00..aacad803f 100644 --- a/doc/abyss-tofastq.1 +++ b/doc/abyss-tofastq.1 @@ -1,4 +1,4 @@ -.TH abyss-tofastq "1" "2014-May" "ABySS 1.5.0" "User Commands" +.TH abyss-tofastq "1" "2014-May" "ABySS 1.5.1" "User Commands" .SH NAME abyss-tofastq \- convert various file formats to FASTQ format .br diff --git a/doc/flowchart.graffle b/doc/flowchart.graffle index a832eb046..edecdc7e9 100644 --- a/doc/flowchart.graffle +++ b/doc/flowchart.graffle @@ -5198,7 +5198,7 @@ {\colortbl;\red255\green255\blue255;} \pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\pardirnatural\qc -\f0\b\fs28 \cf0 ABySS paired-end pipeline version 1.5.0} +\f0\b\fs28 \cf0 ABySS paired-end pipeline version 1.5.1} VerticalPad 0 @@ -8382,7 +8382,7 @@ MasterSheets ModificationDate - 2014-05-01 22:25:41 +0000 + 2014-05-07 21:55:17 +0000 Modifier Tony Raymond NotesVisible @@ -8413,7 +8413,7 @@ NSPaperName string - 69FD0149-2077-40BA-84CF-28739E407FEB + 3F3966D3-439E-49FE-9DBC-7CBF4BBA8A92 NSPaperSize diff --git a/doc/flowchart.pdf b/doc/flowchart.pdf index 910a6d9dc..61af6e175 100644 Binary files a/doc/flowchart.pdf and b/doc/flowchart.pdf differ