Files

General files that are created during processing

processing time is set to be up to 6 hours except for SnpCgh microarray which is limited to 1 hour of processing

1. process_log.text - log file for the project processing.
2. working.txt - generated at the start of processing contain the processing start timestamp, used to indicate front end that the installation still running.
3. working_done.txt - when the installation is done the file working.txt changes name to working_done.txt
4. condensed_log.txt - condensed process log contains process levels to be displayed in the UI during processing
5. completed.txt - created when processing is done, contain the timestamp of when the processing was done.
6. error.txt - will be created in case an error occurred during processing. example of errors: *
7. zipTemp.txt - contain the output of the unzip of zip files uploaded
8. gzTemp.txt - containt the output of the gzip (unpacking) of the files uploaded

Files created during Whole Genome NGS - Single end read (including intermediate files)

1. parent.txt - used to save the name of the directory of the project
2. dataType.txt - contains number to describe the data type uploaded:
   • SnpCgh microarray - 1:0
3. upload_size_1.txt - saves the size (in bytes) of the uploaded file
4. datafiles.txt - contains the name of the datafiles to work on.

Files created during Whole Genome NGS - Paired end read (including intermediate files)

In addition to the files that are created in single end read:

1. upload_size_2.txt - saves the size of the second uploaded file (in bytes)