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making region videos #7

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ZelikowskyLab opened this issue Jan 23, 2024 · 0 comments
Open

making region videos #7

ZelikowskyLab opened this issue Jan 23, 2024 · 0 comments

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@ZelikowskyLab
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Hi,

I am running into issues making region videos in the mouse_demo and also with my own data. when running the following code i get no output at all:

This creates region videos for all the region.

wmax = wshedfile['watershedRegions'].max()

Making region videos. This can take a few minutes depending on how many watershed regions there are. Takes ~1min per region.

for i in range(wmax):
if os.path.exists(parameters.projectPath + '/%s/RegionVids%i/regions_%.3i.mp4' % (parameters.method, wmax, i+1)):
continue
demoutils.makeregionvideo_mice(i, parameters, h5s, clips, datasetnames, minLength=10, maxLength=200, subs=3)


I have tried a bunch of different things, but nothing is working. Let me know if you need more details on my attempted fixes. Are you able to replicate this issue and/or do you have any advice?

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