forked from smorabit/hdWGCNA
-
Notifications
You must be signed in to change notification settings - Fork 0
/
NAMESPACE
139 lines (138 loc) · 3.23 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
# Generated by roxygen2: do not edit by hand
export(AvgModuleExpr)
export(BinPseudotime)
export(ConstructMetacells)
export(ConstructMetaspots)
export(ConstructNetwork)
export(DimPlotMetacells)
export(DoHubGeneHeatmap)
export(EnrichrBarPlot)
export(EnrichrDotPlot)
export(FindAllDMEs)
export(FindDMEs)
export(FindMajorIsoforms)
export(GetActiveWGCNA)
export(GetAvgModuleExpr)
export(GetDatExpr)
export(GetEnrichrTable)
export(GetHubGenes)
export(GetMELoadings)
export(GetMEs)
export(GetMetacellObject)
export(GetModulePreservation)
export(GetModuleScores)
export(GetModuleTraitCorrelation)
export(GetModuleUMAP)
export(GetModules)
export(GetMotifMatrix)
export(GetMotifOverlap)
export(GetMotifScores)
export(GetMotifTargets)
export(GetMotifs)
export(GetMultiExpr)
export(GetNetworkData)
export(GetPFMList)
export(GetPowerTable)
export(GetTOM)
export(GetWGCNAGenes)
export(GetWGCNAParams)
export(HubGeneNetworkPlot)
export(MetacellsByGroups)
export(MetaspotsByGroups)
export(ModuleConnectivity)
export(ModuleCorrNetwork)
export(ModuleCorrelogram)
export(ModuleEigengenes)
export(ModuleExprScore)
export(ModuleFeaturePlot)
export(ModuleNetworkPlot)
export(ModulePreservation)
export(ModuleTFNetwork)
export(ModuleTraitCorrelation)
export(ModuleUMAPPlot)
export(MotifOverlapBarPlot)
export(MotifScan)
export(MotifTargetScore)
export(NormalizeMetacells)
export(OverlapBarPlot)
export(OverlapDotPlot)
export(OverlapModulesDEGs)
export(OverlapModulesMotifs)
export(PlotDMEsLollipop)
export(PlotDMEsVolcano)
export(PlotDendrogram)
export(PlotKMEs)
export(PlotModulePreservation)
export(PlotModuleTraitCorrelation)
export(PlotModuleTrajectory)
export(PlotSoftPowers)
export(ProjectModules)
export(ReassignModules)
export(ResetModuleColors)
export(ResetModuleNames)
export(RunEnrichr)
export(RunHarmonyMetacells)
export(RunModuleUMAP)
export(RunPCAMetacells)
export(RunUMAPMetacells)
export(ScaleMetacells)
export(SelectNetworkGenes)
export(SetActiveWGCNA)
export(SetAvgModuleExpr)
export(SetDatExpr)
export(SetEnrichrTable)
export(SetMELoadings)
export(SetMEs)
export(SetMetacellObject)
export(SetModulePreservation)
export(SetModuleScores)
export(SetModuleTraitCorrelation)
export(SetModuleUMAP)
export(SetModules)
export(SetMotifMatrix)
export(SetMotifOverlap)
export(SetMotifScores)
export(SetMotifTargets)
export(SetMotifs)
export(SetMultiExpr)
export(SetNetworkData)
export(SetPFMList)
export(SetPowerTable)
export(SetWGCNAGenes)
export(SetWGCNAParams)
export(SetupForWGCNA)
export(TestSoftPowers)
export(TestSoftPowersConsensus)
export(TransferModuleGenome)
export(scale01)
export(shuffle_points)
export(umap_theme)
import(Matrix)
import(Seurat)
import(WGCNA)
import(ggplot2)
import(harmony)
import(magrittr)
import(patchwork)
import(uwot)
importFrom(Matrix,colSums)
importFrom(Matrix,rowSums)
importFrom(dplyr,"%>%")
importFrom(dplyr,count)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate_at)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,rename_)
importFrom(dplyr,summarise)
importFrom(dplyr,vars)
importFrom(magrittr,"%<>%")
importFrom(magrittr,extract)
importFrom(methods,is)
importFrom(purrr,map)
importFrom(purrr,map_int)
importFrom(stats,setNames)
importFrom(tester,is_numeric_dataframe)
importFrom(tester,is_numeric_matrix)