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Status of the tools #115

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bebatut opened this issue Sep 14, 2018 · 0 comments

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bebatut commented Sep 14, 2018

Tools	Status of the tool	Status of the wrapper	Assigned to?
antaRNA
CoFold
Kinwalker
MEA
RNAshapes
RNAz
segmentation-fold
ViennaRNA		To udpate	@eggzilla
Compalignp
LocARNA
MAFFT
RNAlien
ARAGORN
Fusion Matcher (FuMa)
GotohScan
INFERNAL
RNABOB
RNAcode
RNAmmer
tRNAscan
RCAS
AREsite2
DoRiNA
PARalyzer
Piranha
TargetFinder
FastQC
Trim Galore!
BlockClust
FlaiMapper
MiRDeep2
NASTIseq
PIPmiR
SortMeRNA
HISAT2
STAR
STAR-fusion
Bowtie 2
BWA
Trinity
featureCounts
htseq-count
Sailfish
Salmon
DESeq2
SAMtools
BEDTools
deepTools
RiboTaper

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