v0.4.2

Release for iRODS UI improvements, catching up with SODAR Core and minor fixes.

• Client-side updating of iRODS links
• Reduce unnecessary iRODS connections
• Upgrade project and requirements for SODAR Core v0.4.3
• Cleanup and refactoring to match SODAR Core v0.4.3
• Remove most local JS/CSS includes
• Reformat using Black

See changelog for a complete list of updates.

v0.4.1

Minor update and bug fix release.

• Upgrade site to SODAR Core v0.4.0
• Remove local filesfolders app, import from SODAR Core
• Improve alternative material name search
• Optimize iRODS file search
• Secure SODAR Taskflow API views
• Bug fixes and minor updates

NOTE: Requires SODAR Taskflow v0.3.1

See changelog for a complete list of updates.

v0.4.0

Update for integrating SODAR with SODAR Core.

• Site now based on SODAR Core v0.3.0
• Add remote project metadata synchronization from SODAR Core
• Remove formerly local apps now provided by SODAR Core (most notably projectroles and timeline)
• Finalize rebranding project to SODAR
• Only minor front-end changes

See changelog for a complete list of updates.

v0.3.3

Update adding an app for cancer study shortcuts in samplesheets.

• Add cancer study app
• Refactor germline study app
• Add general samplesheets helpers and utilities

See changelog for a complete list of updates.

v0.3.2

Minor bug fix and documentation update.

• Add BIH Proteomics data transfer docs (from Mathias Kuhring)
• Fix ISAtab replacing failure if encountering an error in the investigation file
• Fix dropdown menu overflow issue in certain tables

See changelog for a complete list of updates.

v0.3.1

Release for app ui/functionality updates and fixes for v0.3.0.

• Optional automated unpacking for zip archives in Small Files
• Option for validating landing zone files without moving
• Major improvements in iRODS file querying and irodsbackend API
• Redesigned search view
• Search for iRODS files
• External ID display and annotation for samples
• Samplesheets layout improvements
• Enable using content apps for multiple assay types
• Proof-of-concept ID querying API

See changelog for a complete list of updates.

v0.3.0

Release for milestone %"Omics Data Management v0.3".

• Rebrand site as SODAR
• Separate config apps into study and sample sub-apps in samplesheets
• Add special configuration sub-apps to landingzones
• Improve iRODS links and file navigation
• Add a Sphinx-based user manual
• Add IGV session creation for germline projects

See changelog for a complete list of updates.

v0.3.0b

Beta release for milestone %"Omics Data Management v0.3".

• iRODS integration (with omics_taskflow v0.2.0b)
• Landing Zones app added for managing file uploads in iRODS
• Add sample sheet configuration specific sub-apps, bih_germline as a demo case
• Irodsinfo app for configuring iRODS connection

See changelog for a complete list of updates.

v0.2.0

Release for milestone %"Omics Data Management v0.2".

• Add new samplesheets app with ISAtab support
• New URL scheme using object UUIDs
• Remove "project staff" role

See changelog for a complete list of changes.

v0.1

Release for milestone %"Omics Data Management v0.1". see changelog for details.