Test caspo learn

[F-Michelon]

Here is the output of this test :
caspo learn ./DONNEES/reduced_transformed_pkn.sif ./DONNEES/dataset_midas.csv 30 --fit 0.04 --optimum ./RESULTATS/output_test_caspo

Running caspo learn...
/micromamba/fmichelon2020@ec-nantes.fr/envs/potasco/lib/python3.12/site-packages/caspo/core/graph.py:64: FutureWarning: The 'delim_whitespace' keyword in pd.read_csv is deprecated and will be removed in a future version. Use sep='\s+' instead
df = pd.read_csv(path, delim_whitespace=True, names=['source', 'sign', 'target']).drop_duplicates()
A critical error has occurred. Please file an issue at http://github.com/bioasp/caspo/issues

[svidela]

Hi,

Unfortunately the requirements.txt file was never fixed to pin the exact dependencies versions. If you installed caspo using pip install -r requirements.txt you can avoid errors and warnings with the following specific versions:

pandas==1.4
seaborn==0.11

You should run pip uninstall pandas seaborn, modify requirements.txt and then re-run pip install -r requirements.txt. Alternatively, you could use caspo with Docker.

Cheers!