galaxy.yml

- hosts: galaxyservers
  become: true
  vars:
    slurm_roles: ['controller', 'exec']
  pre_tasks:
    - name: Install Dependencies
      package:
        name: ['python-psycopg2', 'git', 'python-virtualenv', 'make']
  handlers:
    - name: Restart Galaxy
      supervisorctl:
        name: galaxy
        state: restarted
  roles:
    - galaxyproject.repos
    # Don't need to install postgres as it is already available in the linux VM.
    # - galaxyproject.postgresql
    # Just needs to set it up.
    - role: natefoo.postgresql_objects
      become: true
      become_user: postgres
    - galaxyproject.galaxy
    #- uchida.miniconda
    - geerlingguy.pip
    - usegalaxy-eu.supervisor
    # We will not install a reverse web proxy for this implementation. It will be handled outside of the galaxy setup.
    #- geerlingguy.nginx
    #- galaxyproject.nginx
  #post_tasks:
  #  - name: Install slurm-drmaa
  #    package:
  #      name: slurm-drmaa
    
    #- name: Fix shed_tools path in shed_tool_conf.xml
    #  replace:
    #    path: "{{ galaxy_shed_tool_conf_file }}"
    #    regexp: '^<toolbox tool_path="../shed_tools">$'
    #    replace: '<toolbox tool_path="{{ galaxy_shed_tools_dir }}">'
    #  notify:
    #    - Restart Galaxy