[ci skip] add build failure record for recipe recipes/bioconductor-variancepartition

Author: BiocondaBot

recipes/bioconductor-variancepartition/build_failure.linux-64.yaml

@@ -1,93 +1,49 @@
-recipe_sha: e616801412faca17579f505544697af7196fd5471027c6bce13d25830698ac84  # The hash of the recipe's meta.yaml at which this recipe failed to build.
+recipe_sha: 15709ae9fac7c7b6efb9b9b204563a6db9507bc97a45a67a73330f55f6c3c8c2  # The hash of the recipe's meta.yaml at which this recipe failed to build.
 skiplist: false # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
 log: |2-
-      - r-cowplot 1.1.3 r44hc72bb7e_1
-      - r-envstats 3.0.0 r44h785f33e_0
-      - r-lmertest 3.1_3 r44hc72bb7e_3
-      - r-tidyr 1.3.1 r44h0d4f4ea_1
-      - r-broom 1.0.7 r44hc72bb7e_0
-      - r-remacor 0.0.18 r44hb79369c_1
-      - r-modelr 0.1.11 r44hc72bb7e_2
-      - r-doby 4.6.24 r44hc72bb7e_0
-      - r-pbkrtest 0.5.3 r44hc72bb7e_0
-    run:
-      - r-corpcor
-      - r-reshape2
-      - r-matrix >=1.4.0
-      - r-rlang
-      - r-base >=4.4,<4.5.0a0
-      - r-base >=4.4,<4.5.0a0
-      - r-matrixstats
-      - r-rdpack
-      - r-scales
-      - bioconductor-limma >=3.62.0,<3.63.0
-      - r-fancova
-      - r-gplots
-      - r-mass
-      - bioconductor-biobase >=2.66.0,<2.67.0
-      - r-aod
-      - r-iterators
-      - r-lmertest
-      - bioconductor-biocparallel >=1.40.0,<1.41.0
-      - r-lme4 >=1.1.33
-      - r-remacor >=0.0.15
-      - r-pbkrtest >=0.4-4
-      - r-rhpcblasctl
-      - r-ggplot2
-  test:
-    commands:
-      - $R -e "library('variancePartition')"
-  about:
-    description: Quantify and interpret multiple sources of biological and technical
-      variation in gene expression experiments. Uses a linear mixed model to quantify
-      variation in gene expression attributable to individual, tissue, time point, or
-      technical variables.  Includes dream differential expression analysis for repeated
-      measures.
-    home: https://bioconductor.org/packages/3.20/bioc/html/variancePartition.html
-    license: GPL-2
-    license_file: /opt/conda/conda-bld/bioconductor-variancepartition_1736182777274/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/share/licenses/GPL-2
-    summary: Quantify and interpret drivers of variation in multilevel gene expression
-      experiments
-  extra:
-    copy_test_source_files: true
-    final: true
-    identifiers:
-      - biotools:variancepartition
-    parent_recipe:
-      name: bioconductor-variancepartition
-      path: recipes/bioconductor-variancepartition
-      version: 1.10.4
+      new_conflicts = self._maybe_raise_for_problems(
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems
+      self._maybe_raise_for_conda_build(
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build
+      raise exc
+  conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-limma[version='>=3.62.1,<3.63.0']")}
+  Encountered problems while solving:
+    - nothing provides requested bioconductor-limma >=3.62.1,<3.63.0
 
+  Could not solve for environment specs
+  The following package could not be installed
+   [31mbioconductor-limma >=3.62.1,<3.63.0 [0m does not exist (perhaps a typo or a missing channel).
+
+  During handling of the above exception, another exception occurred:
 
-  source tree in: /opt/conda/conda-bld/bioconductor-variancepartition_1736182777274/work
-  export PREFIX=/opt/conda/conda-bld/bioconductor-variancepartition_1736182777274/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
-  export BUILD_PREFIX=/opt/conda/conda-bld/bioconductor-variancepartition_1736182777274/_build_env
-  export SRC_DIR=/opt/conda/conda-bld/bioconductor-variancepartition_1736182777274/work
-  During startup - Warning message:
-  Setting LC_TIME failed, using "C"
-  * installing to library /opt/conda/conda-bld/bioconductor-variancepartition_1736182777274/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/library
-  * installing *source* package variancePartition ...
-  ** using staged installation
-  ** R
-  ** data
-  ** inst
-  ** byte-compile and prepare package for lazy loading
-  During startup - Warning message:
-  Setting LC_TIME failed, using "C"
-  Error: package limma 3.62.0 was found, but >= 3.62.1 is required by variancePartition
-  Execution halted
-  ERROR: lazy loading failed for package variancePartition
-  * removing /opt/conda/conda-bld/bioconductor-variancepartition_1736182777274/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/library/variancePartition
   Traceback (most recent call last):
-    File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2558, in build
-      utils.check_call_env(
-    File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 404, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 380, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-variancepartition_1736182777274/work/conda_build.sh']' returned non-zero exit status 1.
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 891, in get_install_actions
+      _actions = _install_actions(prefix, index, specs, subdir=subdir)
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 1307, in install_actions
+      txn = solver.solve_for_transaction(prune=False, ignore_pinned=False)
+    File "/opt/conda/lib/python3.10/site-packages/conda/core/solve.py", line 152, in solve_for_transaction
+      unlink_precs, link_precs = self.solve_for_diff(
+    File "/opt/conda/lib/python3.10/site-packages/conda/core/solve.py", line 221, in solve_for_diff
+      final_precs = self.solve_final_state(
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 223, in solve_final_state
+      out_state = self._solving_loop(in_state, out_state, index)
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 303, in _solving_loop
+      solved = self._solve_attempt(in_state, out_state, index, attempt=attempt)
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 414, in _solve_attempt
+      new_conflicts = self._maybe_raise_for_problems(
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems
+      self._maybe_raise_for_conda_build(
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build
+      raise exc
+  conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-limma[version='>=3.62.1,<3.63.0']")}
+  Encountered problems while solving:
+    - nothing provides requested bioconductor-limma >=3.62.1,<3.63.0
+
+  Could not solve for environment specs
+  The following package could not be installed
+   [31mbioconductor-limma >=3.62.1,<3.63.0 [0m does not exist (perhaps a typo or a missing channel).
 
-  The above exception was the direct cause of the following exception:
+  During handling of the above exception, another exception occurred:
 
   Traceback (most recent call last):
     File "/opt/conda/bin/conda-build", line 11, in <module>
@@ -98,7 +54,51 @@ log: |2-
       return build_tree(
     File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3712, in build_tree
       packages_from_this = build(
-    File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2566, in build
-      raise BuildScriptException(str(exc), caused_by=exc) from exc
-  conda_build.exceptions.BuildScriptException: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-variancepartition_1736182777274/work/conda_build.sh']' returned non-zero exit status 1.
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2338, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 916, in expand_outputs
+      for output_dict, m in deepcopy(_m).get_output_metadata_set(
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/metadata.py", line 2658, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/metadata.py", line 1025, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 650, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 491, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 444, in _read_upstream_pin_files
+      deps, precs, unsat = get_env_dependencies(
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 156, in get_env_dependencies
+      precs = environ.get_package_records(
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 938, in get_install_actions
+      precs = get_package_records(
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 938, in get_install_actions
+      precs = get_package_records(
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 938, in get_install_actions
+      precs = get_package_records(
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 891, in get_install_actions
+      _actions = _install_actions(prefix, index, specs, subdir=subdir)
+    File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 1307, in install_actions
+      txn = solver.solve_for_transaction(prune=False, ignore_pinned=False)
+    File "/opt/conda/lib/python3.10/site-packages/conda/core/solve.py", line 152, in solve_for_transaction
+      unlink_precs, link_precs = self.solve_for_diff(
+    File "/opt/conda/lib/python3.10/site-packages/conda/core/solve.py", line 221, in solve_for_diff
+      final_precs = self.solve_final_state(
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 223, in solve_final_state
+      out_state = self._solving_loop(in_state, out_state, index)
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 303, in _solving_loop
+      solved = self._solve_attempt(in_state, out_state, index, attempt=attempt)
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 414, in _solve_attempt
+      new_conflicts = self._maybe_raise_for_problems(
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems
+      self._maybe_raise_for_conda_build(
+    File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build
+      raise exc
+  conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-limma[version='>=3.62.1,<3.63.0']")}
+  Encountered problems while solving:
+    - nothing provides requested bioconductor-limma >=3.62.1,<3.63.0
+
+  Could not solve for environment specs
+  The following package could not be installed
+   [31mbioconductor-limma >=3.62.1,<3.63.0 [0m does not exist (perhaps a typo or a missing channel).
 # Last 100 lines of the build log.