diff --git a/recipes/taxonkit/meta.yaml b/recipes/taxonkit/meta.yaml
index 8541592fb7a88..3f1db23e066ce 100644
--- a/recipes/taxonkit/meta.yaml
+++ b/recipes/taxonkit/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.12.0" %}
+{% set version = "0.13.0" %}
 
 package:
   name: taxonkit
@@ -9,9 +9,9 @@ build:
 
 source:
   - url: https://github.com/shenwei356/taxonkit/releases/download/v{{ version }}/taxonkit_darwin_amd64.tar.gz # [osx]
-    md5: ee319bccc65d966b6fe2713878c965ac # [osx]
+    md5: c73364b1ac7a20c3eaa098bc643d729c # [osx]
   - url: https://github.com/shenwei356/taxonkit/releases/download/v{{ version }}/taxonkit_linux_amd64.tar.gz # [linux]
-    md5: f9933641dda4e540bc0c8e8c9e268b84 # [linux]
+    md5: 60085d36066740e34c6da097d5bdc850 # [linux]
 
 test:
   commands: