diff --git a/recipes/bioconductor-rsbml/build_failure.linux-64.yaml b/recipes/bioconductor-rsbml/build_failure.linux-64.yaml deleted file mode 100644 index 55fe1aec59c98..0000000000000 --- a/recipes/bioconductor-rsbml/build_failure.linux-64.yaml +++ /dev/null @@ -1,106 +0,0 @@ -recipe_sha: 375689bdc37f11aa430c2a4c469e03ed0055bdda5d3fa78a9a58c654d5b82e3e # The hash of the recipe's meta.yaml at which this recipe failed to build. -skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above. -log: |2- - new_conflicts = self._maybe_raise_for_problems( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems - self._maybe_raise_for_conda_build( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build - raise exc - conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("libsbml=5.10.2")} - Encountered problems while solving: - - nothing provides requested libsbml 5.10.2.* - - Could not solve for environment specs - The following package could not be installed - [31mlibsbml 5.10.2.* [0m does not exist (perhaps a typo or a missing channel). - - During handling of the above exception, another exception occurred: - - Traceback (most recent call last): - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 891, in get_install_actions - _actions = _install_actions(prefix, index, specs, subdir=subdir) - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 1307, in install_actions - txn = solver.solve_for_transaction(prune=False, ignore_pinned=False) - File "/opt/conda/lib/python3.10/site-packages/conda/core/solve.py", line 152, in solve_for_transaction - unlink_precs, link_precs = self.solve_for_diff( - File "/opt/conda/lib/python3.10/site-packages/conda/core/solve.py", line 221, in solve_for_diff - final_precs = self.solve_final_state( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 223, in solve_final_state - out_state = self._solving_loop(in_state, out_state, index) - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 303, in _solving_loop - solved = self._solve_attempt(in_state, out_state, index, attempt=attempt) - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 414, in _solve_attempt - new_conflicts = self._maybe_raise_for_problems( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems - self._maybe_raise_for_conda_build( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build - raise exc - conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("libsbml=5.10.2")} - Encountered problems while solving: - - nothing provides requested libsbml 5.10.2.* - - Could not solve for environment specs - The following package could not be installed - [31mlibsbml 5.10.2.* [0m does not exist (perhaps a typo or a missing channel). - - During handling of the above exception, another exception occurred: - - Traceback (most recent call last): - File "/opt/conda/bin/conda-build", line 11, in - sys.exit(execute()) - File "/opt/conda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 589, in execute - api.build( - File "/opt/conda/lib/python3.10/site-packages/conda_build/api.py", line 209, in build - return build_tree( - File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3712, in build_tree - packages_from_this = build( - File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2338, in build - output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)]) - File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 916, in expand_outputs - for output_dict, m in deepcopy(_m).get_output_metadata_set( - File "/opt/conda/lib/python3.10/site-packages/conda_build/metadata.py", line 2658, in get_output_metadata_set - conda_packages = finalize_outputs_pass( - File "/opt/conda/lib/python3.10/site-packages/conda_build/metadata.py", line 1025, in finalize_outputs_pass - fm = finalize_metadata( - File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 650, in finalize_metadata - build_unsat, host_unsat = add_upstream_pins( - File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 491, in add_upstream_pins - host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files( - File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 444, in _read_upstream_pin_files - deps, precs, unsat = get_env_dependencies( - File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 156, in get_env_dependencies - precs = environ.get_package_records( - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 938, in get_install_actions - precs = get_package_records( - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 938, in get_install_actions - precs = get_package_records( - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 938, in get_install_actions - precs = get_package_records( - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 891, in get_install_actions - _actions = _install_actions(prefix, index, specs, subdir=subdir) - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 1307, in install_actions - txn = solver.solve_for_transaction(prune=False, ignore_pinned=False) - File "/opt/conda/lib/python3.10/site-packages/conda/core/solve.py", line 152, in solve_for_transaction - unlink_precs, link_precs = self.solve_for_diff( - File "/opt/conda/lib/python3.10/site-packages/conda/core/solve.py", line 221, in solve_for_diff - final_precs = self.solve_final_state( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 223, in solve_final_state - out_state = self._solving_loop(in_state, out_state, index) - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 303, in _solving_loop - solved = self._solve_attempt(in_state, out_state, index, attempt=attempt) - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 414, in _solve_attempt - new_conflicts = self._maybe_raise_for_problems( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems - self._maybe_raise_for_conda_build( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build - raise exc - conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("libsbml=5.10.2")} - Encountered problems while solving: - - nothing provides requested libsbml 5.10.2.* - - Could not solve for environment specs - The following package could not be installed - [31mlibsbml 5.10.2.* [0m does not exist (perhaps a typo or a missing channel). -# Last 100 lines of the build log. -category: |- - dependency issue diff --git a/recipes/bioconductor-rsbml/build_failure.osx-64.yaml b/recipes/bioconductor-rsbml/build_failure.osx-64.yaml deleted file mode 100644 index 919ee864aeec3..0000000000000 --- a/recipes/bioconductor-rsbml/build_failure.osx-64.yaml +++ /dev/null @@ -1,104 +0,0 @@ -recipe_sha: 375689bdc37f11aa430c2a4c469e03ed0055bdda5d3fa78a9a58c654d5b82e3e # The hash of the recipe's meta.yaml at which this recipe failed to build. -skiplist: false # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above. -log: |2- - new_conflicts = self._maybe_raise_for_problems( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems - self._maybe_raise_for_conda_build( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build - raise exc - conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {MatchSpec("libsbml=5.10.2")} - Encountered problems while solving: - - nothing provides requested libsbml 5.10.2.* - - Could not solve for environment specs - The following package could not be installed - libsbml 5.10.2.* does not exist (perhaps a typo or a missing channel). - - During handling of the above exception, another exception occurred: - - Traceback (most recent call last): - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 891, in get_install_actions - _actions = _install_actions(prefix, index, specs, subdir=subdir) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 1307, in install_actions - txn = solver.solve_for_transaction(prune=False, ignore_pinned=False) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda/core/solve.py", line 152, in solve_for_transaction - unlink_precs, link_precs = self.solve_for_diff( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda/core/solve.py", line 221, in solve_for_diff - final_precs = self.solve_final_state( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 223, in solve_final_state - out_state = self._solving_loop(in_state, out_state, index) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 303, in _solving_loop - solved = self._solve_attempt(in_state, out_state, index, attempt=attempt) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 414, in _solve_attempt - new_conflicts = self._maybe_raise_for_problems( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems - self._maybe_raise_for_conda_build( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build - raise exc - conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {MatchSpec("libsbml=5.10.2")} - Encountered problems while solving: - - nothing provides requested libsbml 5.10.2.* - - Could not solve for environment specs - The following package could not be installed - libsbml 5.10.2.* does not exist (perhaps a typo or a missing channel). - - During handling of the above exception, another exception occurred: - - Traceback (most recent call last): - File "/opt/mambaforge/envs/bioconda/bin/conda-build", line 11, in - sys.exit(execute()) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 589, in execute - api.build( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/api.py", line 209, in build - return build_tree( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 3712, in build_tree - packages_from_this = build( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 2338, in build - output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)]) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/render.py", line 916, in expand_outputs - for output_dict, m in deepcopy(_m).get_output_metadata_set( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/metadata.py", line 2658, in get_output_metadata_set - conda_packages = finalize_outputs_pass( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/metadata.py", line 1025, in finalize_outputs_pass - fm = finalize_metadata( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/render.py", line 650, in finalize_metadata - build_unsat, host_unsat = add_upstream_pins( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/render.py", line 491, in add_upstream_pins - host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/render.py", line 444, in _read_upstream_pin_files - deps, precs, unsat = get_env_dependencies( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/render.py", line 156, in get_env_dependencies - precs = environ.get_package_records( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 938, in get_install_actions - precs = get_package_records( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 938, in get_install_actions - precs = get_package_records( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 938, in get_install_actions - precs = get_package_records( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 891, in get_install_actions - _actions = _install_actions(prefix, index, specs, subdir=subdir) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 1307, in install_actions - txn = solver.solve_for_transaction(prune=False, ignore_pinned=False) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda/core/solve.py", line 152, in solve_for_transaction - unlink_precs, link_precs = self.solve_for_diff( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda/core/solve.py", line 221, in solve_for_diff - final_precs = self.solve_final_state( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 223, in solve_final_state - out_state = self._solving_loop(in_state, out_state, index) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 303, in _solving_loop - solved = self._solve_attempt(in_state, out_state, index, attempt=attempt) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 414, in _solve_attempt - new_conflicts = self._maybe_raise_for_problems( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems - self._maybe_raise_for_conda_build( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build - raise exc - conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {MatchSpec("libsbml=5.10.2")} - Encountered problems while solving: - - nothing provides requested libsbml 5.10.2.* - - Could not solve for environment specs - The following package could not be installed - libsbml 5.10.2.* does not exist (perhaps a typo or a missing channel). -# Last 100 lines of the build log. diff --git a/recipes/bioconductor-rsbml/meta.yaml b/recipes/bioconductor-rsbml/meta.yaml index 88f6bcab00ccb..5834dd2641440 100644 --- a/recipes/bioconductor-rsbml/meta.yaml +++ b/recipes/bioconductor-rsbml/meta.yaml @@ -32,12 +32,12 @@ requirements: - r-base - libblas - liblapack - - libsbml 5.10.2 + - libsbml >=5.10.2 run: - bioconductor-biocgenerics >=0.52.0,<0.53.0 - bioconductor-graph >=1.84.0,<1.85.0 - r-base - - libsbml 5.10.2 + - libsbml >=5.10.2 source: md5: c0f210dcdea4192cd5745ff9813b1a5b