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Releases: bioconda/bioconda-utils

v0.17.5

19 Apr 16:22
2087334
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  • Ensure mulled tests run Bash (for activate script)

v0.17.4

15 Apr 15:49
a299791
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  • Fix licenses copying for Biocontainers

v0.17.3

13 Apr 12:46
8d2e6c8
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  • Update create-env mulled image to 2.0.0:
    • Add license information from package cache into containers
    • Use /bin/bash for entrypoints
  • Update base images to 2.1.0:
    • Debian 10.9 based

v0.17.2

26 Mar 22:49
af5bdfe
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  • Fix ssh not being available in build container

v0.17.1

24 Mar 11:36
68bbf92
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  • Fix involucro wrapper missing in sdist/wheel

v0.17.0

22 Mar 20:13
ae0128e
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  • Update to quay.io/condaforge/linux-anvil-cos7-x86_64 build base and new base container images

    • New build container is named quay.io/bioconda/bioconda-utils-build-env-cos7

    • Update the build base system to Centos 7 (we still build for CentOS 6 by default for now!).

    • Use the "conda" user from the conda-forge base image during build.

    • Add back libGL.so.1 to the build container.

    • Use new base images and env creation container

      Base images are (based on Debian 10):

      • standard: quay.io/bioconda/base-glibc-busybox-bash:2.0.0
      • extended: quay.io/bioconda/base-glibc-debian-bash:2.0.0

      Container for environment creation via mulled:

      • quay.io/bioconda/create-env
        In conjunction with the entrypoints from the base images above and a
        postinstall step we inject, new containers will run in activated envs.
  • Fix autobump for changed GitHub tag archive URLs

  • Fix packages listed as recipes

v0.16.23

21 Mar 21:41
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CI/CD: Remove superfluous bioconda/ from container tag

v0.16.22

20 Mar 10:58
d5e0d9a
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Merge pull request #698 from bioconda/bump_pinnings_130321

v0.16.21

30 Aug 10:48
8d91a7f
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  • lint: add trigger for missing_meta_yaml
  • build: catch both UnsatisfiableError, DependencyNeedsBuildingError
  • utils.get_package_paths: skip finalize for noarch on osx CI
  • add usegalaxy links as possible extra: identifiers entries
  • linting: update incorrect linting URL
  • update-pinning: improve noarch handling, remove --bump-python-only option
  • update-pinning: add --max-bumps and --no-leaves options
  • update-pinning: don't bump when only adding variants
  • update to python=3.8, conda-forge-pinning=2020.08.29.21.09.48 (leaving clang=9), conda=4.8.4

v0.16.20

02 Jul 19:25
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  • cbc.yaml: r_base: append '.*' instead of ' '
    Reverts build string changes for R packages caused by #662
  • update_pinnings: fix parallel recipe/output mapping
  • update_pinnings: Add option to skip recipe that use certain variant keys
  • update_pinnings: Fail if build string is incomplete