From a475b05a6e17349d61ad60fd5e3cc1ef0ca36955 Mon Sep 17 00:00:00 2001
From: Toni Hermoso Pulido <toni.hermoso@crg.eu>
Date: Fri, 25 Aug 2023 11:15:59 +0200
Subject: [PATCH] rming from main, using branches

---
 base/Dockerfile        | 45 ------------------------------------------
 base/entrypoint.sh     |  6 ------
 pyenv3-java/Dockerfile | 25 -----------------------
 pyenv3/Dockerfile      | 30 ----------------------------
 4 files changed, 106 deletions(-)
 delete mode 100644 base/Dockerfile
 delete mode 100644 base/entrypoint.sh
 delete mode 100644 pyenv3-java/Dockerfile
 delete mode 100644 pyenv3/Dockerfile

diff --git a/base/Dockerfile b/base/Dockerfile
deleted file mode 100644
index 9e6b43a..0000000
--- a/base/Dockerfile
+++ /dev/null
@@ -1,45 +0,0 @@
-FROM almalinux:8
-
-# File Author / Maintainer
-MAINTAINER Toni Hermoso Pulido <toni.hermoso@crg.eu>
-
-ARG PERLBREW_ROOT=/usr/local/perl
-ARG PERL_VERSION=5.28.2
-# Enable perl build options. Example: --build-arg PERL_BUILD="--thread --debug"
-ARG PERL_BUILD=--thread
-
-# Base Perl and builddep
-RUN yum update -y
-RUN yum install -y perl yum-utils
-RUN yum-builddep -y perl
-RUN yum install -y bzip2 zip procps
-RUN yum groupinstall -y 'Development Tools'
-
-RUN mkdir -p $PERLBREW_ROOT
-
-RUN bash -c '\curl -L https://install.perlbrew.pl | bash'
-
-ENV PATH $PERLBREW_ROOT/bin:$PATH
-ENV PERLBREW_PATH $PERLBREW_ROOT/bin
-
-RUN perlbrew --notest install $PERL_BUILD perl-$PERL_VERSION
-RUN perlbrew install-cpanm
-RUN bash -c 'source $PERLBREW_ROOT/etc/bashrc'
-		
-ENV PERLBREW_ROOT $PERLBREW_ROOT
-ENV PATH $PERLBREW_ROOT/perls/perl-$PERL_VERSION/bin:$PATH
-ENV PERLBREW_PERL perl-$PERL_VERSION
-ENV PERLBREW_MANPATH $PELRBREW_ROOT/perls/perl-$PERL_VERSION/man
-ENV PERLBREW_SKIP_INIT 1
-
-RUN ln -s $PERLBREW_ROOT/perls/perl-$PERL_VERSION/bin/perl /usr/local/bin/perl
-
-# Clean cache
-RUN yum clean all
-
-# Workdir place
-RUN mkdir -p /project
-WORKDIR /project
-
-#ENTRYPOINT ["./entrypoint.sh"]
-
diff --git a/base/entrypoint.sh b/base/entrypoint.sh
deleted file mode 100644
index 1728e9c..0000000
--- a/base/entrypoint.sh
+++ /dev/null
@@ -1,6 +0,0 @@
-#!/bin/bash
-
-PERL_SELECTION="$(perlbrew list)"
-PERL_VERSION=${PERL_SELECTION#\* }
-perlbrew switch $PERL_VERSION
-
diff --git a/pyenv3-java/Dockerfile b/pyenv3-java/Dockerfile
deleted file mode 100644
index c6e6227..0000000
--- a/pyenv3-java/Dockerfile
+++ /dev/null
@@ -1,25 +0,0 @@
-FROM biocorecrg/almalinux-perlbrew-pyenv3:8
-
-# File Author / Maintainer
-MAINTAINER Toni Hermoso Pulido <toni.hermoso@crg.eu>
-MAINTAINER Luca Cozzuto <lucacozzuto@gmail.com> 
-
-ARG JAVA_VERSION=11
-ARG MAVEN_VERSION=3.6.3
-
-ENV JAVA_HOME /usr/lib/jvm/java-openjdk
-
-RUN yum update -y
-# Install Java
-RUN yum install -y java-$JAVA_VERSION-openjdk java-$JAVA_VERSION-openjdk-devel
-# Install maven
-
-RUN cd /usr/local; curl --fail --silent --show-error --location --remote-name https://archive.apache.org/dist/maven/maven-3/$MAVEN_VERSION/binaries/apache-maven-$MAVEN_VERSION-bin.tar.gz
-
-RUN cd /usr/local; tar zxf apache-maven-$MAVEN_VERSION-bin.tar.gz
-RUN cd /usr/local; rm apache-maven-$MAVEN_VERSION-bin.tar.gz
-RUN cd /usr/local; ln -s /usr/local/apache-maven-$MAVEN_VERSION/bin/mvn /usr/local/bin/mvn
-
-# Clean cache
-RUN yum clean all
-
diff --git a/pyenv3/Dockerfile b/pyenv3/Dockerfile
deleted file mode 100644
index 3bca19b..0000000
--- a/pyenv3/Dockerfile
+++ /dev/null
@@ -1,30 +0,0 @@
-FROM biocorecrg/almalinux-perlbrew:8
-
-# File Author / Maintainer
-MAINTAINER Toni Hermoso Pulido <toni.hermoso@crg.eu>
-MAINTAINER Luca Cozzuto <lucacozzuto@gmail.com> 
-
-ARG PYENV_ROOT=/usr/local/python
-ARG PYTHON_VERSION=3.7.4
-
-ENV PYENV_ROOT $PYENV_ROOT
-
-RUN bash -c 'curl -L https://raw.githubusercontent.com/pyenv/pyenv-installer/master/bin/pyenv-installer | bash'
-
-ENV PATH $PYENV_ROOT/bin:$PATH
-ENV PYTHON_VERSION $PYTHON_VERSION
-
-RUN yum install -y readline readline-devel sqlite sqlite-devel openssl openssl-devel openssl-libs tk-devel xz xz-devel libffi-devel findutils bzip2 bzip2-devel
-
-RUN pyenv install $PYTHON_VERSION
-
-ENV PATH="$PYENV_ROOT/shims:$PYENV_ROOT/versions/$PYTHON_VERSION/bin:$PATH"
-
-RUN ln -s $PYENV_ROOT/versions/$PYTHON_VERSION/bin/python /usr/local/bin/python
-RUN ln -s $PYENV_ROOT/versions/$PYTHON_VERSION/bin/python3 /usr/local/bin/python3
-RUN ln -s $PYENV_ROOT/versions/$PYTHON_VERSION/bin/pip /usr/local/bin/pip
-RUN ln -s $PYENV_ROOT/versions/$PYTHON_VERSION/bin/pip3 /usr/local/bin/pip3
-
-# Clean cache
-RUN yum clean all
-