diff --git a/lusSTR/tests/data/kinsnps/Kin_pos_1ng_snpsetscombined_evidence.csv b/lusSTR/tests/data/kinsnps/Kin_pos_1ng_snpsetscombined_evidence.csv index 5480a7dd..ce8d9e4c 100644 --- a/lusSTR/tests/data/kinsnps/Kin_pos_1ng_snpsetscombined_evidence.csv +++ b/lusSTR/tests/data/kinsnps/Kin_pos_1ng_snpsetscombined_evidence.csv @@ -1911,7 +1911,6 @@ Kin_pos_1ng_set1 rs543502 3 4 42.0 33.0 75.0 Kin_pos_1ng_set1 rs6671673 4 2 45.0 30.0 75.0 Kin_pos_1ng_set1 rs7176165 4 75.0 75.0 Kin_pos_1ng_set1 rs7706034 1 75.0 75.0 -Kin_pos_1ng_set1 N29insA 2 76.0 76.0 Kin_pos_1ng_set1 rs1009930 1 76.0 76.0 Kin_pos_1ng_set1 rs10167782 4 76.0 76.0 Kin_pos_1ng_set1 rs10196560 2 76.0 76.0 @@ -1949,6 +1948,7 @@ Kin_pos_1ng_set1 rs2723696 1 76.0 76.0 Kin_pos_1ng_set1 rs2816999 4 2 40.0 36.0 76.0 Kin_pos_1ng_set1 rs295340 1 76.0 76.0 Kin_pos_1ng_set1 rs3018845 2 4 44.0 32.0 76.0 +Kin_pos_1ng_set1 rs312262906 2 76.0 76.0 Kin_pos_1ng_set1 rs340828 3 1 46.0 30.0 76.0 Kin_pos_1ng_set1 rs369005 2 4 39.0 37.0 76.0 Kin_pos_1ng_set1 rs3923451 4 76.0 76.0 diff --git a/lusSTR/tests/data/kinsnps/evidence.csv b/lusSTR/tests/data/kinsnps/evidence.csv index 84b2601e..39909c5d 100644 --- a/lusSTR/tests/data/kinsnps/evidence.csv +++ b/lusSTR/tests/data/kinsnps/evidence.csv @@ -1,5 +1,4 @@ Sample Name Marker Allele 1 Allele 2 Height 1 Height 2 -Kin_pos_1ng N29insA 2 76.0 Kin_pos_1ng rs1000022 2 4 176.0 142.0 Kin_pos_1ng rs1000137 4 2 66.0 36.0 Kin_pos_1ng rs10002268 4 365.0 @@ -4521,6 +4520,7 @@ Kin_pos_1ng rs3117915 1 3 85.0 117.0 Kin_pos_1ng rs3118520 3 554.0 Kin_pos_1ng rs312154 4 3 69.0 51.0 Kin_pos_1ng rs312185 1 2 152.0 146.0 +Kin_pos_1ng rs312262906 2 76.0 Kin_pos_1ng rs312272 2 32.0 Kin_pos_1ng rs3124028 4 96.0 Kin_pos_1ng rs3124041 3 221.0 diff --git a/lusSTR/tests/data/kinsnps/multiplerefs.csv b/lusSTR/tests/data/kinsnps/multiplerefs.csv index 32816a51..2ccc33c7 100644 --- a/lusSTR/tests/data/kinsnps/multiplerefs.csv +++ b/lusSTR/tests/data/kinsnps/multiplerefs.csv @@ -1,5 +1,4 @@ Sample Name Marker Allele 1 Allele 2 -Kin_pos_reference N29insA 2 2 Kin_pos_reference rs1000022 2 4 Kin_pos_reference rs1000137 4 2 Kin_pos_reference rs10002268 4 4 @@ -4521,6 +4520,7 @@ Kin_pos_reference rs3117915 1 3 Kin_pos_reference rs3118520 3 3 Kin_pos_reference rs312154 4 3 Kin_pos_reference rs312185 1 2 +Kin_pos_reference rs312262906 2 2 Kin_pos_reference rs312272 2 2 Kin_pos_reference rs3124028 4 4 Kin_pos_reference rs3124041 3 3 @@ -9235,7 +9235,6 @@ Kin_pos_reference rs999717 1 2 Kin_pos_reference rs999813 4 3 Kin_pos_reference rs9999446 1 3 Kin_pos_reference rs9999662 1 1 -Kin_pos_1ng N29insA 2 2 Kin_pos_1ng rs1000022 2 4 Kin_pos_1ng rs1000137 4 2 Kin_pos_1ng rs10002268 4 4 @@ -13757,6 +13756,7 @@ Kin_pos_1ng rs3117915 1 3 Kin_pos_1ng rs3118520 3 3 Kin_pos_1ng rs312154 4 3 Kin_pos_1ng rs312185 1 2 +Kin_pos_1ng rs312262906 2 2 Kin_pos_1ng rs312272 2 2 Kin_pos_1ng rs3124028 4 4 Kin_pos_1ng rs3124041 3 3 diff --git a/lusSTR/tests/data/kinsnps/reference.csv b/lusSTR/tests/data/kinsnps/reference.csv index f9ccdaca..ab809d71 100644 --- a/lusSTR/tests/data/kinsnps/reference.csv +++ b/lusSTR/tests/data/kinsnps/reference.csv @@ -1,5 +1,4 @@ Sample Name Marker Allele 1 Allele 2 -Kin_pos_reference N29insA 2 2 Kin_pos_reference rs1000022 2 4 Kin_pos_reference rs1000137 4 2 Kin_pos_reference rs10002268 4 4 @@ -4521,6 +4520,7 @@ Kin_pos_reference rs3117915 1 3 Kin_pos_reference rs3118520 3 3 Kin_pos_reference rs312154 4 3 Kin_pos_reference rs312185 1 2 +Kin_pos_reference rs312262906 2 2 Kin_pos_reference rs312272 2 2 Kin_pos_reference rs3124028 4 4 Kin_pos_reference rs3124041 3 3 diff --git a/lusSTR/tests/data/kinsnps/snps_kin_all.txt b/lusSTR/tests/data/kinsnps/snps_kin_all.txt index ea458efc..2acc0b23 100644 --- a/lusSTR/tests/data/kinsnps/snps_kin_all.txt +++ b/lusSTR/tests/data/kinsnps/snps_kin_all.txt @@ -10225,6 +10225,8 @@ Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312 Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs3124028 0 G G Kintelligence Contains untyped allele Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312272 32 C C Kintelligence Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312272 10 T T Kintelligence Contains untyped allele +Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312262906 76 C C Phenotype +Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312262906 0 A A Phenotype Contains untyped allele Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312185 152 A A Kintelligence Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312185 146 C C Kintelligence Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312154 69 T T Kintelligence @@ -20075,5 +20077,3 @@ Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs100 Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs1000137 36 C C Kintelligence Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs1000022 176 C C Kintelligence Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs1000022 142 T T Kintelligence -Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method N29insA 76 C C Kintelligence -Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method N29insA 0 A A Kintelligence Contains untyped allele