From 57c064736cf536f3a50dcaf2e3a14dab091f71a3 Mon Sep 17 00:00:00 2001 From: rnmitchell Date: Fri, 29 Dec 2023 13:26:04 -0500 Subject: [PATCH] fixed marker.py --- lusSTR/scripts/marker.py | 7 ------- 1 file changed, 7 deletions(-) diff --git a/lusSTR/scripts/marker.py b/lusSTR/scripts/marker.py index 67b5dc0..b95d7d6 100644 --- a/lusSTR/scripts/marker.py +++ b/lusSTR/scripts/marker.py @@ -390,13 +390,6 @@ def convert(self): break_point = self.uas_sequence.index("GGGCTGCCTA") + 10 else: break_point = self.uas_sequence.index("TTTT") + 14 - # for m in re.finditer("GGGCTGCCTA", self.uas_sequence): - # break_point = m.end() - # try: - # break_point - # except NameError: - # for m in re.finditer("TTTT", self.uas_sequence): - # break_point = m.end() + 10 bracketed_form = ( f"{collapse_repeats_by_length(self.uas_sequence[:break_point], 4)} " f"{collapse_repeats_by_length(self.uas_sequence[break_point:], 4)}"