Merge pull request #72 from valentynbez/main

fix: compilation

Author: valentynbez

.github/workflows/build_docs.yml

@@ -1,49 +1,49 @@
-# This workflow automatically generates the Sphinx documentation required for
-# GitHub pages. Executed when main is pushed to.
-name: Documentation update
-on:
-  push:
-    branches: main
-  workflow_dispatch:
+# # This workflow automatically generates the Sphinx documentation required for
+# # GitHub pages. Executed when main is pushed to.
+# name: Documentation update
+# on:
+#   push:
+#     branches: main
+#   workflow_dispatch:
 
-jobs:
-  build:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/setup-python@v2
-        with:
-          python-version: '3.8'
+# jobs:
+#   build:
+#     runs-on: ubuntu-latest
+#     steps:
+#       - uses: actions/setup-python@v2
+#         with:
+#           python-version: '3.8'
 
-      # Checkout the main branch (docs will be built from this)
-      - uses: actions/checkout@v2
-        with:
-          path: main
-      # Checkout the documentation branch (docs will be pushed to this)
-      - uses: actions/checkout@v2
-        with:
-          ref: gh-pages
-          path: gh-pages
+#       # Checkout the main branch (docs will be built from this)
+#       - uses: actions/checkout@v2
+#         with:
+#           path: main
+#       # Checkout the documentation branch (docs will be pushed to this)
+#       - uses: actions/checkout@v2
+#         with:
+#           ref: gh-pages
+#           path: gh-pages
 
-      - name: Install Sphinx requirements
-        working-directory: ${{ github.workspace }}/main/docs
-        run: |
-          sudo apt-get update -y
-          sudo apt-get install -y pandoc
-          python -m pip install --upgrade pip
-          python -m pip install -r requirements.txt
-      - name: Build documentation
-        working-directory: ${{ github.workspace }}/main/docs
-        run: make html
+#       - name: Install Sphinx requirements
+#         working-directory: ${{ github.workspace }}/main/docs
+#         run: |
+#           sudo apt-get update -y
+#           sudo apt-get install -y pandoc
+#           python -m pip install --upgrade pip
+#           python -m pip install -r requirements.txt
+#       - name: Build documentation
+#         working-directory: ${{ github.workspace }}/main/docs
+#         run: make html
 
-      - name: Move documentation
-        run: |
-          touch main/docs/build/html/.nojekyll
-          cp -a main/docs/build/html/. gh-pages/
-      - name: Upload documentation
-        working-directory: ${{ github.workspace }}/gh-pages
-        run: |
-          git config --local user.email "action@github.com"
-          git config --local user.name "GitHub Action"
-          git add --all
-          git diff-index --quiet HEAD || git commit -m "docs update" -a
-          git push
+#       - name: Move documentation
+#         run: |
+#           touch main/docs/build/html/.nojekyll
+#           cp -a main/docs/build/html/. gh-pages/
+#       - name: Upload documentation
+#         working-directory: ${{ github.workspace }}/gh-pages
+#         run: |
+#           git config --local user.email "action@github.com"
+#           git config --local user.name "GitHub Action"
+#           git add --all
+#           git diff-index --quiet HEAD || git commit -m "docs update" -a
+#           git push

mDeepFRI/alignment_utils.pyx

@@ -1,3 +1,5 @@
+# distutils: define_macros=NPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION
+
 cimport cython
 
 import numpy as np

setup.py

@@ -160,7 +160,7 @@ def run(self):
               sources=[SRC_DIR + "/alignment_utils.pyx"],
               language="c++",
               libraries=["stdc++"],
-              extra_compile_args=extra_compile_args.extend("-w")),
+              extra_compile_args=extra_compile_args),
 ]
 
 extras = {}