Release v1.1.8

Author: valentynbez

.github/workflows/release.yml

@@ -6,52 +6,48 @@ on:
       - v*
 
 jobs:
-  wheel-linux-aarch64:
-    name: Build Linux wheels (Aarch64)
-    runs-on: ubuntu-20.04
-    strategy:
-      matrix:
-        python-tag:
-        - cp38-manylinux_aarch64
-        - cp39-manylinux_aarch64
-        - cp310-manylinux_aarch64
-        - cp311-manylinux_aarch64
-        - cp312-manylinux_aarch64
-    steps:
-    - uses: actions/checkout@v4
-    - name: Set up QEMU
-      id: qemu
-      uses: docker/setup-qemu-action@v2
-      with:
-        platforms: all
-    - name: Build manylinux wheels
-      uses: pypa/cibuildwheel@v2.18.1
-      env:
-        CIBW_ARCHS: aarch64
-        CIBW_BUILD: ${{ matrix.python-tag }}
-        CIBW_BEFORE_ALL: yum install -y bzip2-devel xz-devel
-        CIBW_BEFORE_BUILD: pip install cython
-        CIBW_TEST_COMMAND: python -m unittest mDeepFRI.tests -vv
-        CIBW_BUILD_VERBOSITY: 2
-        CIBW_TEST_REQUIRES: importlib-resources
-      with:
-        output-dir: dist
-    - uses: actions/upload-artifact@v3
-      with:
-        name: wheels
-        path: dist/*
+  # wheel-linux-aarch64:
+  #   name: Build Linux wheels (Aarch64)
+  #   runs-on: ubuntu-20.04
+  #   strategy:
+  #     matrix:
+  #       python-tag:
+  #       - cp39-manylinux_aarch64
+  #       - cp310-manylinux_aarch64
+  #       - cp311-manylinux_aarch64
+  #   steps:
+  #   - uses: actions/checkout@v4
+  #   - name: Set up QEMU
+  #     id: qemu
+  #     uses: docker/setup-qemu-action@v2
+  #     with:
+  #       platforms: all
+  #   - name: Build manylinux wheels
+  #     uses: pypa/cibuildwheel@v2.18.1
+  #     env:
+  #       CIBW_ARCHS: aarch64
+  #       CIBW_BUILD: ${{ matrix.python-tag }}
+  #       CIBW_BEFORE_ALL: yum install -y bzip2-devel xz-devel
+  #       CIBW_BEFORE_BUILD: pip install cython
+  #       CIBW_TEST_COMMAND: python -m unittest mDeepFRI.tests -vv
+  #       CIBW_BUILD_VERBOSITY: 2
+  #       CIBW_TEST_REQUIRES: importlib-resources
+  #     with:
+  #       output-dir: dist
+  #   - uses: actions/upload-artifact@v3
+  #     with:
+  #       name: wheels
+  #       path: dist/*
 
   wheel-linux-x86_64:
     name: Build Linux wheels (x86-64)
     runs-on: ubuntu-20.04
     strategy:
       matrix:
         python-tag:
-        - cp38-manylinux_x86_64
         - cp39-manylinux_x86_64
         - cp310-manylinux_x86_64
         - cp311-manylinux_x86_64
-        - cp312-manylinux_x86_64
     steps:
     - uses: actions/checkout@v4
     - name: Build manylinux wheels
@@ -77,11 +73,9 @@ jobs:
     strategy:
       matrix:
         python-tag:
-        - cp38-macosx_x86_64
         - cp39-macosx_x86_64
         - cp310-macosx_x86_64
         - cp311-macosx_x86_64
-        - cp312-macosx_x86_64
     steps:
     - uses: actions/checkout@v4
     - name: Build manylinux wheels
@@ -106,11 +100,9 @@ jobs:
     strategy:
       matrix:
         python-tag:
-        - cp38-macosx_arm64
         - cp39-macosx_arm64
         - cp310-macosx_arm64
         - cp311-macosx_arm64
-        - cp312-macosx_arm64
     steps:
     - uses: actions/checkout@v4
     - name: Build manylinux wheels
@@ -178,7 +170,6 @@ jobs:
     needs:
     - sdist
     - test-sdist
-    - wheel-linux-aarch64
     - wheel-linux-x86_64
     - wheel-macos-x86_64
     - wheel-macos-aarch64

CHANGELOG.md

@@ -5,7 +5,12 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ## [Unreleased]
-[Unreleased]: https://github.com/bioinf-MCB/Metagenomic-DeepFRI/compare/v1.1.7...HEAD
+[Unreleased]: https://github.com/bioinf-MCB/Metagenomic-DeepFRI/compare/v1.1.8...HEAD
+
+## [Release]
+
+## [1.1.8] - 2024-06-26
+[1.1.8]: https://github.com/bioinf-MCB/Metagenomic-DeepFRI/compare/v1.1.7...v1.1.8
 
 ### Added
 
@@ -15,10 +20,7 @@ to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ### Fixed
 - hetero atom bug introduced by Ruff (c044a158)
-
-## [Release]
-
-
+- MacOS CI/CD bug connected to Foldcomp binary
 
 ## [1.1.7] - 2024-06-10
 [1.1.7]: https://github.com/bioinf-MCB/Metagenomic-DeepFRI/compare/v1.1.6...v1.1.7

mDeepFRI/__init__.py

@@ -2,7 +2,7 @@
 
 from mDeepFRI.mmseqs import QueryFile
 
-__version__ = "1.1.7"
+__version__ = "1.1.8"
 __author__ = "Valentyn Bezshapkin <valentyn.bezshapkin@micro.biol.ethz.ch>"
 __licencse__ = "BSD-3-Clause"
 

setup.cfg

@@ -27,7 +27,7 @@ project_urls =
 [options]
 zip_safe = false
 packages = mDeepFRI
-python_requires = >=3.8
+python_requires = >=3.9, <3.12
 setup_requires =
     setuptools >=46.0
     cython ~=3.0

setup.py

@@ -289,7 +289,6 @@ def run(self):
     packages=find_packages(),
     package_data={
         "foldcomp": ["foldcomp_bin"],
-        "mmseqs": ["mmseqs"],
-        "test_data": ["mDeepFRI/tests/data"]
+        "mmseqs": ["mmseqs"]
     },
 )