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Releases: biolink/kgx

1.0.0b0

11 Mar 18:56
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1.0.0b0 Pre-release
Pre-release
  • Fixed caching bug in RdfSource
  • Fixed bug when setting 'provided_by' for a source

1.0.0a0

04 Mar 20:54
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1.0.0a0 Pre-release
Pre-release
  • Added Source implementation for reading from various data stores
  • Added Sink implementation for writing to various data stores
  • Added a simplified Transformer that is agnostic
  • Refactor KGX to make use of Sources and Sinks
  • Added ability to stream graphs (Thanks to @gregr for the inspiration)

0.5.0

23 Feb 22:32
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  • This is the final release on the 0.x.x
  • Added ability to assign a default category in SssomTransformer when the incoming category is invalid
  • Added the ability to generate different types of graph summary reports

0.4.0

08 Feb 22:18
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  • Fixed a bug in NtTransformer when parsing malformed triples
  • Added a transformer for parsing SSSOM
  • Added ability to fold predicates to node properties
  • Added ability to unfold node properties to predicates
  • Added ability to remove singleton nodes from a graph
  • Fixed bug in KGX CLI transform operation that prevented stack trace from showing up
  • Unified the way predicates are parsed across different transformers
  • Added ability to annotate edges with OWLStar vocabulary in RdfOwlTransformer

0.3.1

21 Jan 01:08
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  • Fixed a bug that led to import errors
  • Fixed column ordering when exporting CSV/TSV
  • Added ability to generate a TRAPI knowledge map for a graph
  • Fixed bug in ObographJsonTransformer when inferring node category

0.3.0

21 Dec 22:16
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  • Added Graph API to KGX
  • Added compatibility to Biolink Model 1.4.0
  • Added the ability to facet on node and edge properties for graph-summary CLI operation
  • Fixed a bug where source name defined in YAML was not being used for graph name

0.2.4

25 Nov 17:14
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  • Fixed bug when handling empty elements returned from bmt
  • Fixed bug in CLI when setting property types in RdfTransformer
  • Fixed bug when reifying edges on export in RdfTransformer

0.2.3

25 Nov 17:14
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  • Updated requirements.txt
  • Added a Dockerfile

0.2.2

25 Nov 17:13
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  • Made get_toolkit method configurable
  • Use proper input format when parsing OWL via CLI
  • Switched default parsing format from CSV to TSV
  • Fixed bug with spawning processes when transforming source
  • Fixed parsing of xrefs from from OBOGraph JSON

0.2.0

25 Nov 17:13
9298c3c
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  • Improved clique merge operation and addded support for strict and relaxed mode
  • Fixed a major bug while merging lists during graph merge operation
  • Fixed a bug in neo4j-download CLI
  • Updated the merge and transform YAML format
  • Added support for parsing and exporting jsonlines
  • KGX now assigns UUID for edges that don't have and id
  • Updated documentation