Using a configuration file/schema for sketching multiple samples and reads

[bluenote-1577]

From this comment: #7 (comment)

Hi @bluenote-1577,

I am following up regarding the samples that consist of multiple FASTQ files. In addition to providing the file paths directly on the command line, I was considering a feature where sylph could accept a text file as input. This file would list, for each sample, the file paths of the associated FASTQ files.

For example, similar to tools like Simka, the file format could look like this:

sample1: sample1_run1_1.fastq.gz, sample1_run2_1.fastq.gz; sample1_run1_2.fastq.gz, sample1_run2_2.fastq.gz  
sample2: sample2_run1_1.fastq.gz, sample2_run2_1.fastq.gz; sample2_run1_2.fastq.gz, sample2_run2_2.fastq.gz  

Let me know your thoughts on this idea.