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I wanted to include human and mouse genomes in the reference, as we would like to use sylph as a initial contamination check step. I wonder what would be a good compression number (-c argument) here for genomes this long?
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@GaryZhangYue I've never actually tried working with animal genomes like humans or mice with sylph. My intuition: in this case, I would try a higher -c, like -c 1000.
Dear Jim,
I wanted to include human and mouse genomes in the reference, as we would like to use sylph as a initial contamination check step. I wonder what would be a good compression number (-c argument) here for genomes this long?
The text was updated successfully, but these errors were encountered: