Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

sketch human and mouse genomes #36

Open
GaryZhangYue opened this issue Dec 20, 2024 · 1 comment
Open

sketch human and mouse genomes #36

GaryZhangYue opened this issue Dec 20, 2024 · 1 comment

Comments

@GaryZhangYue
Copy link

Dear Jim,

I wanted to include human and mouse genomes in the reference, as we would like to use sylph as a initial contamination check step. I wonder what would be a good compression number (-c argument) here for genomes this long?

@bluenote-1577
Copy link
Owner

@GaryZhangYue I've never actually tried working with animal genomes like humans or mice with sylph. My intuition: in this case, I would try a higher -c, like -c 1000.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants