DESCRIPTION

Package: pedmod
Type: Package
Title: Pedigree Models
Version: 0.2.5
Authors@R: c(
  person("Benjamin", "Christoffersen", 
         email = "boennecd@gmail.com", 
         role = c("cre", "aut"), 
         comment = c(ORCID = "0000-0002-7182-1346")), 
  person("Alan", "Genz", 
         role = c("cph")),
  person("Frank", "Bretz", 
         role = c("cph")),
  person("Bjoern", "Bornkamp", 
         role = c("cph")), 
  person("Torsten", "Hothorn", 
         role = c("cph")),
  person("Christophe", "Dutang", 
         role = c("cph")),
  person("Diethelm", "Wuertz", 
         role = c("cph")),
  person("R-core", email = "R-core@R-project.org",
         role = "cph"),
  person("Leo", "Belzile", 
         role = "cph"),
  person("Zdravko", "Botev", 
         role = "cph"))
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Description: Provides functions to estimate mixed probit models using, for 
    instance, pedigree data like in <doi:10.1002/sim.1603>. The models are also 
    commonly called liability threshold models. The approximation is 
    based on direct log marginal likelihood approximations like the randomized 
    Quasi-Monte Carlo suggested by <doi:10.1198/106186002394> with a similar 
    procedure to approximate the derivatives. The minimax tilting method 
    suggested by <doi:10.1111/rssb.12162> is also supported. Graph-based methods 
    are also provided that can be used to simplify pedigrees.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.0
URL: https://github.com/boennecd/pedmod
BugReports: https://github.com/boennecd/pedmod/issues
LinkingTo: 
    Rcpp,
    RcppArmadillo,
    BH, 
    testthat,
    psqn
Imports: 
    Rcpp, 
    alabama
Suggests: 
    testthat,
    mvtnorm,
    xml2,
    knitr,
    rmarkdown,
    R.rsp, 
    abind, 
    kinship2,
    igraph,
    TruncatedNormal,
    numDeriv
Depends: 
    R (>= 3.5.0)
VignetteBuilder: R.rsp
SystemRequirements: C++17