T_sample.ktr

<?xml version="1.0" encoding="UTF-8"?>
<transformation>
  <info>
    <name>T_sample</name>
    <description/>
    <extended_description/>
    <trans_version/>
    <trans_type>Normal</trans_type>
    <trans_status>0</trans_status>
    <directory>/</directory>
    <parameters>
    </parameters>
    <log>
      <trans-log-table>
        <connection/>
        <schema/>
        <table/>
        <size_limit_lines/>
        <interval/>
        <timeout_days/>
        <field>
          <id>ID_BATCH</id>
          <enabled>Y</enabled>
          <name>ID_BATCH</name>
        </field>
        <field>
          <id>CHANNEL_ID</id>
          <enabled>Y</enabled>
          <name>CHANNEL_ID</name>
        </field>
        <field>
          <id>TRANSNAME</id>
          <enabled>Y</enabled>
          <name>TRANSNAME</name>
        </field>
        <field>
          <id>STATUS</id>
          <enabled>Y</enabled>
          <name>STATUS</name>
        </field>
        <field>
          <id>LINES_READ</id>
          <enabled>Y</enabled>
          <name>LINES_READ</name>
          <subject/>
        </field>
        <field>
          <id>LINES_WRITTEN</id>
          <enabled>Y</enabled>
          <name>LINES_WRITTEN</name>
          <subject/>
        </field>
        <field>
          <id>LINES_UPDATED</id>
          <enabled>Y</enabled>
          <name>LINES_UPDATED</name>
          <subject/>
        </field>
        <field>
          <id>LINES_INPUT</id>
          <enabled>Y</enabled>
          <name>LINES_INPUT</name>
          <subject/>
        </field>
        <field>
          <id>LINES_OUTPUT</id>
          <enabled>Y</enabled>
          <name>LINES_OUTPUT</name>
          <subject/>
        </field>
        <field>
          <id>LINES_REJECTED</id>
          <enabled>Y</enabled>
          <name>LINES_REJECTED</name>
          <subject/>
        </field>
        <field>
          <id>ERRORS</id>
          <enabled>Y</enabled>
          <name>ERRORS</name>
        </field>
        <field>
          <id>STARTDATE</id>
          <enabled>Y</enabled>
          <name>STARTDATE</name>
        </field>
        <field>
          <id>ENDDATE</id>
          <enabled>Y</enabled>
          <name>ENDDATE</name>
        </field>
        <field>
          <id>LOGDATE</id>
          <enabled>Y</enabled>
          <name>LOGDATE</name>
        </field>
        <field>
          <id>DEPDATE</id>
          <enabled>Y</enabled>
          <name>DEPDATE</name>
        </field>
        <field>
          <id>REPLAYDATE</id>
          <enabled>Y</enabled>
          <name>REPLAYDATE</name>
        </field>
        <field>
          <id>LOG_FIELD</id>
          <enabled>Y</enabled>
          <name>LOG_FIELD</name>
        </field>
        <field>
          <id>EXECUTING_SERVER</id>
          <enabled>N</enabled>
          <name>EXECUTING_SERVER</name>
        </field>
        <field>
          <id>EXECUTING_USER</id>
          <enabled>N</enabled>
          <name>EXECUTING_USER</name>
        </field>
        <field>
          <id>CLIENT</id>
          <enabled>N</enabled>
          <name>CLIENT</name>
        </field>
      </trans-log-table>
      <perf-log-table>
        <connection/>
        <schema/>
        <table/>
        <interval/>
        <timeout_days/>
        <field>
          <id>ID_BATCH</id>
          <enabled>Y</enabled>
          <name>ID_BATCH</name>
        </field>
        <field>
          <id>SEQ_NR</id>
          <enabled>Y</enabled>
          <name>SEQ_NR</name>
        </field>
        <field>
          <id>LOGDATE</id>
          <enabled>Y</enabled>
          <name>LOGDATE</name>
        </field>
        <field>
          <id>TRANSNAME</id>
          <enabled>Y</enabled>
          <name>TRANSNAME</name>
        </field>
        <field>
          <id>STEPNAME</id>
          <enabled>Y</enabled>
          <name>STEPNAME</name>
        </field>
        <field>
          <id>STEP_COPY</id>
          <enabled>Y</enabled>
          <name>STEP_COPY</name>
        </field>
        <field>
          <id>LINES_READ</id>
          <enabled>Y</enabled>
          <name>LINES_READ</name>
        </field>
        <field>
          <id>LINES_WRITTEN</id>
          <enabled>Y</enabled>
          <name>LINES_WRITTEN</name>
        </field>
        <field>
          <id>LINES_UPDATED</id>
          <enabled>Y</enabled>
          <name>LINES_UPDATED</name>
        </field>
        <field>
          <id>LINES_INPUT</id>
          <enabled>Y</enabled>
          <name>LINES_INPUT</name>
        </field>
        <field>
          <id>LINES_OUTPUT</id>
          <enabled>Y</enabled>
          <name>LINES_OUTPUT</name>
        </field>
        <field>
          <id>LINES_REJECTED</id>
          <enabled>Y</enabled>
          <name>LINES_REJECTED</name>
        </field>
        <field>
          <id>ERRORS</id>
          <enabled>Y</enabled>
          <name>ERRORS</name>
        </field>
        <field>
          <id>INPUT_BUFFER_ROWS</id>
          <enabled>Y</enabled>
          <name>INPUT_BUFFER_ROWS</name>
        </field>
        <field>
          <id>OUTPUT_BUFFER_ROWS</id>
          <enabled>Y</enabled>
          <name>OUTPUT_BUFFER_ROWS</name>
        </field>
      </perf-log-table>
      <channel-log-table>
        <connection/>
        <schema/>
        <table/>
        <timeout_days/>
        <field>
          <id>ID_BATCH</id>
          <enabled>Y</enabled>
          <name>ID_BATCH</name>
        </field>
        <field>
          <id>CHANNEL_ID</id>
          <enabled>Y</enabled>
          <name>CHANNEL_ID</name>
        </field>
        <field>
          <id>LOG_DATE</id>
          <enabled>Y</enabled>
          <name>LOG_DATE</name>
        </field>
        <field>
          <id>LOGGING_OBJECT_TYPE</id>
          <enabled>Y</enabled>
          <name>LOGGING_OBJECT_TYPE</name>
        </field>
        <field>
          <id>OBJECT_NAME</id>
          <enabled>Y</enabled>
          <name>OBJECT_NAME</name>
        </field>
        <field>
          <id>OBJECT_COPY</id>
          <enabled>Y</enabled>
          <name>OBJECT_COPY</name>
        </field>
        <field>
          <id>REPOSITORY_DIRECTORY</id>
          <enabled>Y</enabled>
          <name>REPOSITORY_DIRECTORY</name>
        </field>
        <field>
          <id>FILENAME</id>
          <enabled>Y</enabled>
          <name>FILENAME</name>
        </field>
        <field>
          <id>OBJECT_ID</id>
          <enabled>Y</enabled>
          <name>OBJECT_ID</name>
        </field>
        <field>
          <id>OBJECT_REVISION</id>
          <enabled>Y</enabled>
          <name>OBJECT_REVISION</name>
        </field>
        <field>
          <id>PARENT_CHANNEL_ID</id>
          <enabled>Y</enabled>
          <name>PARENT_CHANNEL_ID</name>
        </field>
        <field>
          <id>ROOT_CHANNEL_ID</id>
          <enabled>Y</enabled>
          <name>ROOT_CHANNEL_ID</name>
        </field>
      </channel-log-table>
      <step-log-table>
        <connection/>
        <schema/>
        <table/>
        <timeout_days/>
        <field>
          <id>ID_BATCH</id>
          <enabled>Y</enabled>
          <name>ID_BATCH</name>
        </field>
        <field>
          <id>CHANNEL_ID</id>
          <enabled>Y</enabled>
          <name>CHANNEL_ID</name>
        </field>
        <field>
          <id>LOG_DATE</id>
          <enabled>Y</enabled>
          <name>LOG_DATE</name>
        </field>
        <field>
          <id>TRANSNAME</id>
          <enabled>Y</enabled>
          <name>TRANSNAME</name>
        </field>
        <field>
          <id>STEPNAME</id>
          <enabled>Y</enabled>
          <name>STEPNAME</name>
        </field>
        <field>
          <id>STEP_COPY</id>
          <enabled>Y</enabled>
          <name>STEP_COPY</name>
        </field>
        <field>
          <id>LINES_READ</id>
          <enabled>Y</enabled>
          <name>LINES_READ</name>
        </field>
        <field>
          <id>LINES_WRITTEN</id>
          <enabled>Y</enabled>
          <name>LINES_WRITTEN</name>
        </field>
        <field>
          <id>LINES_UPDATED</id>
          <enabled>Y</enabled>
          <name>LINES_UPDATED</name>
        </field>
        <field>
          <id>LINES_INPUT</id>
          <enabled>Y</enabled>
          <name>LINES_INPUT</name>
        </field>
        <field>
          <id>LINES_OUTPUT</id>
          <enabled>Y</enabled>
          <name>LINES_OUTPUT</name>
        </field>
        <field>
          <id>LINES_REJECTED</id>
          <enabled>Y</enabled>
          <name>LINES_REJECTED</name>
        </field>
        <field>
          <id>ERRORS</id>
          <enabled>Y</enabled>
          <name>ERRORS</name>
        </field>
        <field>
          <id>LOG_FIELD</id>
          <enabled>N</enabled>
          <name>LOG_FIELD</name>
        </field>
      </step-log-table>
      <metrics-log-table>
        <connection/>
        <schema/>
        <table/>
        <timeout_days/>
        <field>
          <id>ID_BATCH</id>
          <enabled>Y</enabled>
          <name>ID_BATCH</name>
        </field>
        <field>
          <id>CHANNEL_ID</id>
          <enabled>Y</enabled>
          <name>CHANNEL_ID</name>
        </field>
        <field>
          <id>LOG_DATE</id>
          <enabled>Y</enabled>
          <name>LOG_DATE</name>
        </field>
        <field>
          <id>METRICS_DATE</id>
          <enabled>Y</enabled>
          <name>METRICS_DATE</name>
        </field>
        <field>
          <id>METRICS_CODE</id>
          <enabled>Y</enabled>
          <name>METRICS_CODE</name>
        </field>
        <field>
          <id>METRICS_DESCRIPTION</id>
          <enabled>Y</enabled>
          <name>METRICS_DESCRIPTION</name>
        </field>
        <field>
          <id>METRICS_SUBJECT</id>
          <enabled>Y</enabled>
          <name>METRICS_SUBJECT</name>
        </field>
        <field>
          <id>METRICS_TYPE</id>
          <enabled>Y</enabled>
          <name>METRICS_TYPE</name>
        </field>
        <field>
          <id>METRICS_VALUE</id>
          <enabled>Y</enabled>
          <name>METRICS_VALUE</name>
        </field>
      </metrics-log-table>
    </log>
    <maxdate>
      <connection/>
      <table/>
      <field/>
      <offset>0.0</offset>
      <maxdiff>0.0</maxdiff>
    </maxdate>
    <size_rowset>10000</size_rowset>
    <sleep_time_empty>50</sleep_time_empty>
    <sleep_time_full>50</sleep_time_full>
    <unique_connections>N</unique_connections>
    <feedback_shown>Y</feedback_shown>
    <feedback_size>50000</feedback_size>
    <using_thread_priorities>Y</using_thread_priorities>
    <shared_objects_file/>
    <capture_step_performance>N</capture_step_performance>
    <step_performance_capturing_delay>1000</step_performance_capturing_delay>
    <step_performance_capturing_size_limit>100</step_performance_capturing_size_limit>
    <dependencies>
    </dependencies>
    <partitionschemas>
    </partitionschemas>
    <slaveservers>
    </slaveservers>
    <clusterschemas>
    </clusterschemas>
    <created_user>-</created_user>
    <created_date>2024/04/18 15:55:14.662</created_date>
    <modified_user>-</modified_user>
    <modified_date>2024/04/18 15:55:14.662</modified_date>
    <key_for_session_key/>
    <is_key_private>N</is_key_private>
  </info>
  <notepads>
  </notepads>
  <connection>
    <name>sqlite3</name>
    <server/>
    <type>SQLITE</type>
    <access>Native</access>
    <database>C:\Users\mctur\source\data-warehouse\lims-storage\db.sqlite3</database>
    <port/>
    <username/>
    <password>Encrypted </password>
    <servername/>
    <data_tablespace/>
    <index_tablespace/>
    <attributes>
      <attribute>
        <code>FORCE_IDENTIFIERS_TO_LOWERCASE</code>
        <attribute>N</attribute>
      </attribute>
      <attribute>
        <code>FORCE_IDENTIFIERS_TO_UPPERCASE</code>
        <attribute>N</attribute>
      </attribute>
      <attribute>
        <code>IS_CLUSTERED</code>
        <attribute>N</attribute>
      </attribute>
      <attribute>
        <code>PRESERVE_RESERVED_WORD_CASE</code>
        <attribute>Y</attribute>
      </attribute>
      <attribute>
        <code>QUOTE_ALL_FIELDS</code>
        <attribute>N</attribute>
      </attribute>
      <attribute>
        <code>SUPPORTS_BOOLEAN_DATA_TYPE</code>
        <attribute>Y</attribute>
      </attribute>
      <attribute>
        <code>SUPPORTS_TIMESTAMP_DATA_TYPE</code>
        <attribute>Y</attribute>
      </attribute>
      <attribute>
        <code>USE_POOLING</code>
        <attribute>N</attribute>
      </attribute>
    </attributes>
  </connection>
  <order>
    <hop>
      <from>js:sample</from>
      <to>ur:samples</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>sample_values</from>
      <to>dl:sample_type</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>ur:samples</from>
      <to>sample_values 2</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>Filter rows 3</from>
      <to>sample_values</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>sv: template_fields</from>
      <to>Sort rows</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>sv: rename_columns</from>
      <to>Filter rows</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>js: set_values_to_null</from>
      <to>String operations</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>js: sample_type</from>
      <to>sv: rename_columns</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>String operations</from>
      <to>js: sample_type</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>Sort rows</from>
      <to>js: set_values_to_null</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>CSV file input</from>
      <to>sv: template_fields</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>Filter rows</from>
      <to>Filter rows 3</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>dl:sample_type</from>
      <to>Database lookup</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>Database lookup</from>
      <to>js:sample</to>
      <enabled>Y</enabled>
    </hop>
    <hop>
      <from>sample_values 2</from>
      <to>Insert / update</to>
      <enabled>Y</enabled>
    </hop>
  </order>
  <step>
    <name>Filter rows 3</name>
    <type>FilterRows</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <send_true_to>sample_values</send_true_to>
    <send_false_to/>
    <compare>
      <condition>
        <negated>N</negated>
        <leftvalue>sample_id</leftvalue>
        <function>IS NOT NULL</function>
        <rightvalue/>
      </condition>
    </compare>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>1104</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>dl:sample_type</name>
    <type>DBLookup</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <connection>sqlite3</connection>
    <cache>N</cache>
    <cache_load_all>N</cache_load_all>
    <cache_size>0</cache_size>
    <lookup>
      <schema/>
      <table>dimsampletype</table>
      <orderby/>
      <fail_on_multiple>N</fail_on_multiple>
      <eat_row_on_failure>N</eat_row_on_failure>
      <key>
        <name>sample_type</name>
        <field>sample_type</field>
        <condition>=</condition>
        <name2/>
      </key>
      <value>
        <name>id</name>
        <rename>sample_type_id</rename>
        <default/>
        <type>None</type>
      </value>
    </lookup>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>1344</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>js:sample</name>
    <type>ScriptValueMod</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <compatible>N</compatible>
    <optimizationLevel>9</optimizationLevel>
    <jsScripts>
      <jsScript>
        <jsScript_type>0</jsScript_type>
        <jsScript_name>Script 1</jsScript_name>
        <jsScript_script>var sample_status_id = '';</jsScript_script>
      </jsScript>
    </jsScripts>
    <fields>
      <field>
        <name>sample_status_id</name>
        <rename>sample_status_id</rename>
        <type>String</type>
        <length>-1</length>
        <precision>-1</precision>
        <replace>N</replace>
      </field>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>1520</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>sample_values</name>
    <type>SelectValues</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <fields>
      <field>
        <name>sample_id</name>
        <rename/>
      </field>
      <field>
        <name>protocol_number</name>
        <rename/>
      </field>
      <field>
        <name>tid</name>
        <rename/>
      </field>
      <field>
        <name>participant_id</name>
        <rename/>
      </field>
      <field>
        <name>gender</name>
        <rename/>
      </field>
      <field>
        <name>date_of_birth</name>
        <rename/>
      </field>
      <field>
        <name>date_sampled</name>
        <rename/>
      </field>
      <field>
        <name>time_sampled</name>
        <rename/>
      </field>
      <field>
        <name>sample_condition</name>
        <rename/>
      </field>
      <field>
        <name>user_created</name>
        <rename/>
      </field>
      <field>
        <name>cinitials</name>
        <rename/>
      </field>
      <field>
        <name>visit_code</name>
        <rename/>
      </field>
      <field>
        <name>data_source</name>
        <rename/>
      </field>
      <field>
        <name>requisition_id</name>
        <rename/>
      </field>
      <field>
        <name>sample_type</name>
        <rename/>
      </field>
      <select_unspecified>N</select_unspecified>
      <meta>
        <name>date_of_birth</name>
        <rename>date_of_birth</rename>
        <type>Date</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>date_sampled</name>
        <rename>date_sampled</rename>
        <type>Date</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>1248</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>sample_values 2</name>
    <type>SelectValues</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <fields>
      <field>
        <name>sample_id</name>
        <rename/>
      </field>
      <field>
        <name>protocol_number</name>
        <rename/>
      </field>
      <field>
        <name>tid</name>
        <rename/>
      </field>
      <field>
        <name>participant_id</name>
        <rename/>
      </field>
      <field>
        <name>gender</name>
        <rename/>
      </field>
      <field>
        <name>date_of_birth</name>
        <rename/>
      </field>
      <field>
        <name>date_sampled</name>
        <rename/>
      </field>
      <field>
        <name>time_sampled</name>
        <rename/>
      </field>
      <field>
        <name>sample_condition</name>
        <rename/>
      </field>
      <field>
        <name>user_created</name>
        <rename/>
      </field>
      <field>
        <name>cinitials</name>
        <rename/>
      </field>
      <field>
        <name>visit_code</name>
        <rename/>
      </field>
      <field>
        <name>requisition_id</name>
        <rename/>
      </field>
      <field>
        <name>sample_status_id</name>
        <rename/>
      </field>
      <field>
        <name>sample_type_id</name>
        <rename/>
      </field>
      <field>
        <name>source_file_id</name>
        <rename/>
      </field>
      <select_unspecified>N</select_unspecified>
      <meta>
        <name>date_of_birth</name>
        <rename>date_of_birth</rename>
        <type>Date</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>date_sampled</name>
        <rename>date_sampled</rename>
        <type>Date</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>1728</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>ur:samples</name>
    <type>Unique</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <count_rows>N</count_rows>
    <count_field/>
    <reject_duplicate_row>N</reject_duplicate_row>
    <error_description/>
    <fields>
      <field>
        <name>sample_id</name>
        <case_insensitive>N</case_insensitive>
      </field>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>1616</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>sv: template_fields</name>
    <type>SelectValues</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <fields>
      <field>
        <name>physical_position</name>
      </field>
      <field>
        <name>physical_PID</name>
      </field>
      <field>
        <name>physical_protocol</name>
      </field>
      <field>
        <name>physical_freezer</name>
      </field>
      <field>
        <name>physical_box</name>
      </field>
      <field>
        <name>physical_rack</name>
      </field>
      <field>
        <name>physical_sampletype</name>
      </field>
      <field>
        <name>TID</name>
      </field>
      <field>
        <name>PAT_ID</name>
      </field>
      <field>
        <name>gender</name>
      </field>
      <field>
        <name>DOB</name>
      </field>
      <field>
        <name>sample_date_drawn</name>
      </field>
      <field>
        <name>sample_time_drawn</name>
      </field>
      <field>
        <name>sample_condition</name>
      </field>
      <field>
        <name>sample_visitid</name>
      </field>
      <field>
        <name>KeyOpCreated</name>
      </field>
      <field>
        <name>CINITIALS</name>
      </field>
      <field>
        <name>edc_specimen_identifier</name>
      </field>
      <field>
        <name>data_source</name>
      </field>
      <select_unspecified>N</select_unspecified>
      <meta>
        <name>sample_date_drawn</name>
        <rename>sample_date_drawn</rename>
        <type>Date</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask>yyyy-MM-dd</conversion_mask>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>DOB</name>
        <rename>DOB</rename>
        <type>Date</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask>yyyy-MM-dd</conversion_mask>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>208</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>sv: rename_columns</name>
    <type>SelectValues</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <fields>
      <field>
        <name>physical_position</name>
      </field>
      <field>
        <name>physical_PID</name>
      </field>
      <field>
        <name>physical_protocol</name>
      </field>
      <field>
        <name>physical_freezer</name>
      </field>
      <field>
        <name>physical_box</name>
      </field>
      <field>
        <name>physical_rack</name>
      </field>
      <field>
        <name>TID</name>
      </field>
      <field>
        <name>PAT_ID</name>
      </field>
      <field>
        <name>gender</name>
      </field>
      <field>
        <name>DOB</name>
      </field>
      <field>
        <name>sample_date_drawn</name>
      </field>
      <field>
        <name>sample_time_drawn</name>
      </field>
      <field>
        <name>sample_condition</name>
      </field>
      <field>
        <name>KeyOpCreated</name>
      </field>
      <field>
        <name>CINITIALS</name>
      </field>
      <field>
        <name>sample_visitid_1</name>
      </field>
      <field>
        <name>physical_sampletype_1</name>
      </field>
      <field>
        <name>data_source</name>
      </field>
      <field>
        <name>data_source_1</name>
      </field>
      <field>
        <name>edc_specimen_identifier</name>
      </field>
      <select_unspecified>N</select_unspecified>
      <remove>
        <name>data_source</name>
      </remove>
      <meta>
        <name>physical_PID</name>
        <rename>sample_id</rename>
        <type>None</type>
        <length>15</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>physical_sampletype_1</name>
        <rename>sample_type</rename>
        <type>None</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>physical_freezer</name>
        <rename>freezer</rename>
        <type>None</type>
        <length>10</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>physical_rack</name>
        <rename>rack</rename>
        <type>None</type>
        <length>7</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>physical_box</name>
        <rename>box_name</rename>
        <type>None</type>
        <length>7</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>physical_position</name>
        <rename>positions</rename>
        <type>None</type>
        <length>15</length>
        <precision>0</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>sample_date_drawn</name>
        <rename>date_sampled</rename>
        <type>Date</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask>yyyy-MM-dd</conversion_mask>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>sample_time_drawn</name>
        <rename>time_sampled</rename>
        <type>None</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>physical_protocol</name>
        <rename>protocol_number</rename>
        <type>None</type>
        <length>6</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>edc_specimen_identifier</name>
        <rename>requisition_id</rename>
        <type>None</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>sample_condition</name>
        <rename>sample_condition</rename>
        <type>None</type>
        <length>15</length>
        <precision>0</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>sample_visitid_1</name>
        <rename>visit_code</rename>
        <type>None</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>PAT_ID</name>
        <rename>participant_id</rename>
        <type>None</type>
        <length>16</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>DOB</name>
        <rename>date_of_birth</rename>
        <type>Date</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask>yyyy-MM-dd</conversion_mask>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>gender</name>
        <rename>gender</rename>
        <type>None</type>
        <length>1</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>TID</name>
        <rename>tid</rename>
        <type>None</type>
        <length>15</length>
        <precision>0</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>KeyOpCreated</name>
        <rename>user_created</rename>
        <type>None</type>
        <length>15</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>CINITIALS</name>
        <rename>cinitials</rename>
        <type>None</type>
        <length>3</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
      <meta>
        <name>data_source_1</name>
        <rename>data_source</rename>
        <type>None</type>
        <length>-2</length>
        <precision>-2</precision>
        <conversion_mask/>
        <date_format_lenient>false</date_format_lenient>
        <date_format_locale/>
        <date_format_timezone/>
        <lenient_string_to_number>false</lenient_string_to_number>
        <encoding/>
        <decimal_symbol/>
        <grouping_symbol/>
        <currency_symbol/>
        <storage_type/>
      </meta>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>864</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>js: set_values_to_null</name>
    <type>ScriptValueMod</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <compatible>N</compatible>
    <optimizationLevel>9</optimizationLevel>
    <jsScripts>
      <jsScript>
        <jsScript_type>0</jsScript_type>
        <jsScript_name>Script 1</jsScript_name>
        <jsScript_script>//Script here
if (sample_visitid !== null){
if (sample_visitid.toLowerCase().indexOf("haar") >=0) {
	sample_visitid = null;
}
else if (sample_visitid.toLowerCase().indexOf("scree") >=0){
sample_visitid = null;
} 
}


if (physical_sampletype !== null){
if (physical_sampletype.indexOf("Plasama") !== -1){
	physical_sampletype = "Plasma";
}else {physical_sampletype = physical_sampletype}

}

if (data_source == null){
data_source = "old_lis"
}</jsScript_script>
      </jsScript>
    </jsScripts>
    <fields>
      <field>
        <name>sample_visitid</name>
        <rename>sample_visitid</rename>
        <type>String</type>
        <length>-1</length>
        <precision>-1</precision>
        <replace>N</replace>
      </field>
      <field>
        <name>physical_sampletype</name>
        <rename>physical_sampletype</rename>
        <type>String</type>
        <length>-1</length>
        <precision>-1</precision>
        <replace>N</replace>
      </field>
      <field>
        <name>data_source</name>
        <rename>data_source</rename>
        <type>String</type>
        <length>-1</length>
        <precision>-1</precision>
        <replace>N</replace>
      </field>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>480</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>js: sample_type</name>
    <type>ScriptValueMod</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <compatible>N</compatible>
    <optimizationLevel>9</optimizationLevel>
    <jsScripts>
      <jsScript>
        <jsScript_type>0</jsScript_type>
        <jsScript_name>Script 1</jsScript_name>
        <jsScript_script>if (physical_sampletype !== null){
if (physical_sampletype.indexOf("Plasama") >=0){
	physical_sampletype = 'Plasma';
}

}</jsScript_script>
      </jsScript>
    </jsScripts>
    <fields>
      <field>
        <name>physical_sampletype</name>
        <rename>physical_sampletype</rename>
        <type>String</type>
        <length>-1</length>
        <precision>-1</precision>
        <replace>Y</replace>
      </field>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>736</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>String operations</name>
    <type>StringOperations</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <fields>
      <field>
        <in_stream_name>physical_sampletype</in_stream_name>
        <out_stream_name/>
        <trim_type>both</trim_type>
        <lower_upper/>
        <padding_type/>
        <pad_char/>
        <pad_len/>
        <init_cap/>
        <mask_xml/>
        <digits/>
        <remove_special_characters/>
      </field>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>608</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>Sort rows</name>
    <type>SortRows</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <directory>%%java.io.tmpdir%%</directory>
    <prefix>out</prefix>
    <sort_size>1000000</sort_size>
    <free_memory/>
    <compress>N</compress>
    <compress_variable/>
    <unique_rows>N</unique_rows>
    <fields>
      <field>
        <name>physical_PID</name>
        <ascending>N</ascending>
        <case_sensitive>N</case_sensitive>
        <collator_enabled>N</collator_enabled>
        <collator_strength>0</collator_strength>
        <presorted>N</presorted>
      </field>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>352</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>Filter rows</name>
    <type>FilterRows</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <send_true_to>Filter rows 3</send_true_to>
    <send_false_to/>
    <compare>
      <condition>
        <negated>N</negated>
        <conditions>
          <condition>
            <negated>N</negated>
            <leftvalue>date_sampled</leftvalue>
            <function>IS NOT NULL</function>
            <rightvalue/>
          </condition>
          <condition>
            <negated>N</negated>
            <operator>OR</operator>
            <leftvalue>sample_type</leftvalue>
            <function>IS NOT NULL</function>
            <rightvalue/>
          </condition>
          <condition>
            <negated>N</negated>
            <operator>OR</operator>
            <leftvalue>participant_id</leftvalue>
            <function>IS NOT NULL</function>
            <rightvalue/>
          </condition>
          <condition>
            <negated>N</negated>
            <operator>AND</operator>
            <leftvalue>box_name</leftvalue>
            <function>IS NOT NULL</function>
            <rightvalue/>
          </condition>
        </conditions>
      </condition>
    </compare>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>992</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>CSV file input</name>
    <type>CsvInput</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <filename>C:/Users/mctur/Downloads/old_lis_fr_58_4.csv</filename>
    <filename_field/>
    <rownum_field/>
    <include_filename>N</include_filename>
    <separator>,</separator>
    <enclosure>"</enclosure>
    <header>Y</header>
    <buffer_size>50000</buffer_size>
    <lazy_conversion>Y</lazy_conversion>
    <add_filename_result>N</add_filename_result>
    <parallel>N</parallel>
    <newline_possible>N</newline_possible>
    <format>mixed</format>
    <encoding/>
    <fields>
      <field>
        <name>physical_position</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>physical_PID</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>physical_protocol</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>6</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>physical_freezer</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>10</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>physical_box</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>7</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>physical_rack</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>7</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>physical_sampletype</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>6</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>ID</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>archived</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>protocolnumber</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>6</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>headerdate</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>8</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>PID</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>7</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>TID</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>pinitials</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>3</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>visitid</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>SiteID</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>SeqID</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>PAT_ID</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>16</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>OTHER_PAT_REF</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>OTHER_PAT_REF2</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>gender</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>DOB</name>
        <type>String</type>
        <format>yyyy-MM-dd</format>
        <currency>$</currency>
        <decimal/>
        <group>,</group>
        <length>-1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>Q005X0</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>Q006X0</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>36</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>IPMS_Barcode</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>IPMS_sample_ref</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_time_received</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>8</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_date_drawn</name>
        <type>String</type>
        <format>yyyy-MM-dd</format>
        <currency>$</currency>
        <decimal/>
        <group>,</group>
        <length>-1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_time_drawn</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>8</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_site_id</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_clinician_initials</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>3</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_protocolnumber</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>6</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_billingcode</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>6</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_type_id</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>5</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_tubes_received</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_volume</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_condition</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_priority</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_tray_id</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_visitid</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>4</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>sample_comment</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>QAReviewCode</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>KeyOpCreated</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>KeyOpLastModified</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>dateReceived</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>14</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>dateCreated</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>14</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>dateLastModified</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>14</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>version</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>SampleAge</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>testing_received</name>
        <type>Integer</type>
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        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
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        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>testing_date_received</name>
        <type>Date</type>
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        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>-1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>testing_time_received</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>Q001X0</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>16</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>testing_results_approved</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>machine_serial_number</name>
        <type>Boolean</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>-1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>record_sta</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>remote_cmp</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>time_stamp</name>
        <type>Boolean</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>-1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>RID</name>
        <type>Boolean</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>-1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
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      <field>
        <name>astm_send_batchID</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>GRN</name>
        <type>Integer</type>
        <format>#</format>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>15</length>
        <precision>0</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>CINITIALS</name>
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        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
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        <trim_type>none</trim_type>
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      <field>
        <name>batch_id</name>
        <type>Boolean</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>-1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
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      <field>
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        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
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        <precision>-1</precision>
        <trim_type>none</trim_type>
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      <field>
        <name>LID</name>
        <type>String</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>7</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>physical_pid</name>
        <type>Boolean</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>-1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
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      <field>
        <name>Sample type</name>
        <type>Boolean</type>
        <format/>
        <currency>$</currency>
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        <group>,</group>
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        <trim_type>none</trim_type>
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      <field>
        <name>F8</name>
        <type>Boolean</type>
        <format/>
        <currency>$</currency>
        <decimal>.</decimal>
        <group>,</group>
        <length>-1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
      <field>
        <name>data_source</name>
        <type>String</type>
        <format/>
        <currency/>
        <decimal/>
        <group/>
        <length>-1</length>
        <precision>-1</precision>
        <trim_type>none</trim_type>
      </field>
    </fields>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>64</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>Database lookup</name>
    <type>DBLookup</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <connection>sqlite3</connection>
    <cache>N</cache>
    <cache_load_all>N</cache_load_all>
    <cache_size>0</cache_size>
    <lookup>
      <schema/>
      <table>dimsourcefile</table>
      <orderby/>
      <fail_on_multiple>N</fail_on_multiple>
      <eat_row_on_failure>N</eat_row_on_failure>
      <key>
        <name>data_source</name>
        <field>source_file_name</field>
        <condition>=</condition>
        <name2/>
      </key>
      <value>
        <name>id</name>
        <rename>source_file_id</rename>
        <default/>
        <type>None</type>
      </value>
    </lookup>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>1440</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step>
    <name>Insert / update</name>
    <type>InsertUpdate</type>
    <description/>
    <distribute>Y</distribute>
    <custom_distribution/>
    <copies>1</copies>
    <partitioning>
      <method>none</method>
      <schema_name/>
    </partitioning>
    <connection>sqlite3</connection>
    <commit>100</commit>
    <update_bypassed>N</update_bypassed>
    <lookup>
      <schema/>
      <table>dimsample</table>
      <key>
        <name>sample_id</name>
        <field>sample_id</field>
        <condition>=</condition>
        <name2/>
      </key>
      <value>
        <name>sample_id</name>
        <rename>sample_id</rename>
        <update>Y</update>
      </value>
      <value>
        <name>protocol_number</name>
        <rename>protocol_number</rename>
        <update>Y</update>
      </value>
      <value>
        <name>tid</name>
        <rename>tid</rename>
        <update>Y</update>
      </value>
      <value>
        <name>participant_id</name>
        <rename>participant_id</rename>
        <update>Y</update>
      </value>
      <value>
        <name>gender</name>
        <rename>gender</rename>
        <update>Y</update>
      </value>
      <value>
        <name>date_of_birth</name>
        <rename>date_of_birth</rename>
        <update>Y</update>
      </value>
      <value>
        <name>date_sampled</name>
        <rename>date_sampled</rename>
        <update>Y</update>
      </value>
      <value>
        <name>time_sampled</name>
        <rename>time_sampled</rename>
        <update>Y</update>
      </value>
      <value>
        <name>sample_condition</name>
        <rename>sample_condition</rename>
        <update>Y</update>
      </value>
      <value>
        <name>user_created</name>
        <rename>user_created</rename>
        <update>Y</update>
      </value>
      <value>
        <name>cinitials</name>
        <rename>cinitials</rename>
        <update>Y</update>
      </value>
      <value>
        <name>visit_code</name>
        <rename>visit_code</rename>
        <update>Y</update>
      </value>
      <value>
        <name>requisition_id</name>
        <rename>requisition_id</rename>
        <update>Y</update>
      </value>
      <value>
        <name>sample_status_id</name>
        <rename>sample_status_id</rename>
        <update>Y</update>
      </value>
      <value>
        <name>sample_type_id</name>
        <rename>sample_type_id</rename>
        <update>Y</update>
      </value>
      <value>
        <name>source_file_id</name>
        <rename>source_file_id</rename>
        <update>Y</update>
      </value>
    </lookup>
    <attributes/>
    <cluster_schema/>
    <remotesteps>
      <input>
      </input>
      <output>
      </output>
    </remotesteps>
    <GUI>
      <xloc>1872</xloc>
      <yloc>352</yloc>
      <draw>Y</draw>
    </GUI>
  </step>
  <step_error_handling>
  </step_error_handling>
  <slave-step-copy-partition-distribution>
  </slave-step-copy-partition-distribution>
  <slave_transformation>N</slave_transformation>
  <attributes/>
</transformation>