diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 3365782..2af8c9e 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -58,6 +58,7 @@ jobs: mamba install -c conda-forge -c bioconda snakemake=7.28.3 singularity - name: Run workflow run: | + ls -R tests/ snakemake --directory tests --configfile tests/config.yaml --profile tests/profile --snakefile workflow/Snakefile run-workflow-no-te: runs-on: ubuntu-latest @@ -139,4 +140,4 @@ jobs: mamba install -c conda-forge -c bioconda snakemake=7.28.3 singularity - name: Run workflow run: | - snakemake --directory tests --configfile tests/config-no-trna-te.yaml --profile tests/profile --snakefile workflow/Snakefile \ No newline at end of file + snakemake --directory tests --configfile tests/config-no-trna-te.yaml --profile tests/profile --snakefile workflow/Snakefile