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+# Changelog
+
+## 1.0.0 (2023-11-17)
+
+
+### Features
+
+* add file for Snakemake workflow catalog ([cf8723d](https://github.com/boulardlab/3t-seq/commit/cf8723d5883490917ded763e23468eef14529598))
+* add pseudocounts to count matrix if cannot estimate size factors ([219d665](https://github.com/boulardlab/3t-seq/commit/219d66534c0b2c7ba8c7b9440d7de7c1d5d7774c))
+* explicit all star outputs ([2f2d7b9](https://github.com/boulardlab/3t-seq/commit/2f2d7b9d747fd3e417cc6b70b9e8c8530c4a619b))
+* start basic documentation ([1d57ff5](https://github.com/boulardlab/3t-seq/commit/1d57ff57d3e081914db188ac4ea5ca8ca2165fd9))
+* update Dockerfile ([877bf88](https://github.com/boulardlab/3t-seq/commit/877bf8846652c89035864a97cc83945bc0217a19))
+
+
+### Bug Fixes
+
+* add tests ([418381b](https://github.com/boulardlab/3t-seq/commit/418381be91cbba78942f953a11a23d4c819db230))
+* add text data ([328781a](https://github.com/boulardlab/3t-seq/commit/328781a3ee4721c6501968f98cf05f703fe70bf5))
+* config directory ([bbf4926](https://github.com/boulardlab/3t-seq/commit/bbf492680d9cb1807719818ae2c126506b755715))
+* correctly pass genome label to get_rmsk.py ([8157a11](https://github.com/boulardlab/3t-seq/commit/8157a11836f56526c70ef94511ae50ff658196b2))
+* edit_condition_file rule ([adb0a5e](https://github.com/boulardlab/3t-seq/commit/adb0a5ec36bd4fdab975d00fba255a7ecf3505de))
+* mkdir ([646a3d4](https://github.com/boulardlab/3t-seq/commit/646a3d4fa781622f3abdab9baaf862ab8baddb32))
+* mv configuration docs to specific README file ([a8adec4](https://github.com/boulardlab/3t-seq/commit/a8adec4e0c5e1efdfe8cc68cfc326bae7b48c02d))
+* pin R version for SalmonTE ([b7c238b](https://github.com/boulardlab/3t-seq/commit/b7c238baafd2510295944cfebe21d6af76a93b17))
+* polish ([5d4b3b7](https://github.com/boulardlab/3t-seq/commit/5d4b3b70e62eeec3f9dde11f203349f669773b6d))
+* remove useless print ([fa11e58](https://github.com/boulardlab/3t-seq/commit/fa11e58041ab6427b6aea8737e9a3abedd6408ad))
+* snakemake variable ([a123c63](https://github.com/boulardlab/3t-seq/commit/a123c63128c31f11cdc41093e1d6adb14dc8829e))
+* syntax ([1d20176](https://github.com/boulardlab/3t-seq/commit/1d201761d5f4489ecee120f718d1f1a94460f948))
+* update TOKEN in main CI workflow ([3d9faaa](https://github.com/boulardlab/3t-seq/commit/3d9faaa92e4e51a1059d18b73fcba03fdc8a12f1))