code for white matter morphology project
Steps for studying white matter morphology
- Preprocess diffusion files
- run AFQ and Dan's fibers
- Using the output from AFQ, run script to create volumes from each fiber group - need to get from Dan
- run script to create surfaces from each volume - createsurfallfibers.m
- run sript to get shapeDNA of each surface file - get_shapeDNA
- read .ev (shapeDNA) files into python - parse_ev_files.py
- do some ML on the data