To run this app locally (on your laptop, IU HCP systems, etc..) first make sure you clone this repo somewhere on your system.
git clone git@github.com:brain-life/dp.git
Then, inside ./dp directory, create a file named config.json
To run compute_profiles
{
"dtiinit": "/N/u/some_path_to_dtiinit_output/.",
"optimal": "/N/u/some_path_to_appA_output/fe_optimal.mat",
"afq": "/N/u/some_patht_afq_output/output.mat",
"command": "profile"
}
If you don't have the test data, you can download it from BL.
Then, you can run compute_profiles, start the matlab session and run compute_profiles function without any argument.