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[Feature] Filter the moving and fixed image prior to registration #50

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IgorTatarnikov opened this issue Aug 8, 2024 · 2 comments
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enhancement New feature or request

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@IgorTatarnikov
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brainreg preprocesses the images prior to registration by filtering. We should replicate this functionality.

This will need a toggle in the UI, maybe a checkbox right above the Run button labelled Filter Images.

@IgorTatarnikov IgorTatarnikov added the enhancement New feature or request label Aug 8, 2024
@saarah815 saarah815 mentioned this issue Aug 12, 2024
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@adamltyson
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Just FYI, this pre-processing should be made flexible. One of the issues with brainreg is that the filtering is great for 10um serial section 2p datasets, and less good for everything else.

@IgorTatarnikov
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Sounds good, we should expose the parameters to the user to set via the UI.

In the same vein I guess we should also expose different filtering strategies! I'm unsure of how to present this via the UI, should we curate a set of filtering strategies and have users pick from those, or should we expose the entire skimage.filters and let users construct their own pipeline?

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