This code allows to segment the Posterior Arcuate, the Middle Longitudinal Fasciculus, the Vertical Occipital Fascicuclus and the Temporo-Parietal Connection. See Bullock et al. (2019) Brain Strcutre and Function for more details.
- Dan Bullock (iisdanbul@gmail.com)
If you use this code please cite the following articles.
- Bullock, D., Takemura, H., Caiafa, C. F., Kitchell, L., McPherson, B., Caron, B., and Pestilli, F. (2019) Associative white matter tracts in the posterior human brain with different degrees of investigative attention. Brain Structure and Function. DOI:10.1007/s00429-019-01907-8
- Caiafa C. and Pestilli, F. (2017) Multidimensional encoding of brain connectomes. Scientific Reports. DOI: 10.1038/s41598-017-09250-w
- Yeatman J.D., Dougherty R.F., Myall N.J., Wandell B.A., Feldman H.M. (2012). Tract Profiles of White Matter Properties: Automating Fiber-Tract Quantification. PLoS One.
- Pestilli, F., Yeatman, J. Rokem, A., Kay, K. and Wandell, B. (2014) Evaluation and statistical inference in living connectomes. Nature Methods. DOI:10.1038/nmeth.3098.
- Matlab 2018 or later: https://www.mathworks.com/products/matlab.html
- VISTASOFT: https://github.com/vistalab/vistasoft
- ENCODE: https://github.com/brain-life/encode
- MBA: https://github.com/francopestilli/mba
- AFQ: https://github.com/yeatmanlab/AFQ
Sample datasets can be downloaded from Brainlife.io using Brainlife's CLI.
npm install -g brainlife
bl login
mkdir input
bl dataset download 5a0e604116e499548135de87 && mv 5a0e604116e499548135de87 input/track
bl dataset download 5a0dcb1216e499548135dd27 && mv 5a0dcb1216e499548135dd27 input/dtiinit
TO use this code in MatLab open the and ...
All output files will be generated under the current working directory (pwd). The main output of this code is a file called TBA.mat. This file contains following object.
fg =
field1: 'name'
field2: 'name'