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convert and test the Morphologist pipeline #20

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denisri opened this issue May 20, 2022 · 0 comments
Open

convert and test the Morphologist pipeline #20

denisri opened this issue May 20, 2022 · 0 comments
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enhancement New feature or request

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@denisri
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denisri commented May 20, 2022

One of the major goals for us is to obtain a new Morphologist pipeline in Capsul v3 structure, which is able to run.
The Axon->capsul conversion script has been reworked, and I think the converted pipeline has the correct structure and state. It has been added in morphologist-gpl in the capsul3 branch (as morphologist.capsul.morphologist).
I have not tried to run it yet because we need to implement the completion, and have the new execution infrastructure.

In addition, a FakeMorphologist has been derived from it, and set in capsul.pipeline.test.fake_morphologist.morphologist.Morphologist. Its structure and state is now (I think) the exact same as the original one, and it has no execution dependencies: it runs without the real morphologist software, and produces fake outputs just to test the pipeline structure.

We should build a use case to test it.

@denisri denisri added the enhancement New feature or request label May 20, 2022
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