diff --git a/browser/ui/views/frame/brave_browser_view.cc b/browser/ui/views/frame/brave_browser_view.cc
index 410cbf7a78cc..4b33bf79e78d 100644
--- a/browser/ui/views/frame/brave_browser_view.cc
+++ b/browser/ui/views/frame/brave_browser_view.cc
@@ -587,6 +587,18 @@ void BraveBrowserView::UpdateSearchTabsButtonState() {
 
 BraveBrowserView::~BraveBrowserView() {
   tab_cycling_event_handler_.reset();
+  // Removes the bubble from the browser, as it uses the `ToolbarView` as an
+  // archor, and that leaves a dangling reference once the `TopContainerView` is
+  // destroyed before all `SupportsUserData` is cleared.
+  if (brave_shields::CookieListOptInBubbleHost::FromBrowser(browser_.get())) {
+    brave_shields::CookieListOptInBubbleHost::RemoveFromBrowser(browser_.get());
+  }
+
+  // Same as above.
+  if (brave_rewards::TipPanelBubbleHost::FromBrowser(browser_.get())) {
+    brave_rewards::TipPanelBubbleHost::RemoveFromBrowser(browser_.get());
+  }
+
   DCHECK(!tab_cycling_event_handler_);
 }
 
diff --git a/patches/chrome-browser-ui-views-bubble-webui_bubble_manager.h.patch b/patches/chrome-browser-ui-views-bubble-webui_bubble_manager.h.patch
index 37d93a862e57..8556d2313b6c 100644
--- a/patches/chrome-browser-ui-views-bubble-webui_bubble_manager.h.patch
+++ b/patches/chrome-browser-ui-views-bubble-webui_bubble_manager.h.patch
@@ -1,8 +1,8 @@
 diff --git a/chrome/browser/ui/views/bubble/webui_bubble_manager.h b/chrome/browser/ui/views/bubble/webui_bubble_manager.h
-index edd7d37a12e182cc663db4e565b8a9edb12e0c70..043ec6578181c02b4bad4d59769287cee6f91907 100644
+index edd7d37a12e182cc663db4e565b8a9edb12e0c70..e90187359fc82f33135212fb627ac07d495076d0 100644
 --- a/chrome/browser/ui/views/bubble/webui_bubble_manager.h
 +++ b/chrome/browser/ui/views/bubble/webui_bubble_manager.h
-@@ -165,11 +165,13 @@ class WebUIBubbleManagerImpl : public WebUIBubbleManager {
+@@ -165,9 +165,11 @@ class WebUIBubbleManagerImpl : public WebUIBubbleManager {
  
   private:
    // WebUIBubbleManager:
@@ -12,8 +12,5 @@ index edd7d37a12e182cc663db4e565b8a9edb12e0c70..043ec6578181c02b4bad4d59769287ce
        views::BubbleBorder::Arrow arrow) override;
 + private:
  
--  const raw_ptr<views::View> anchor_view_;
-+  const raw_ptr<views::View, DanglingUntriaged> anchor_view_;
+   const raw_ptr<views::View> anchor_view_;
    const raw_ptr<Profile, DanglingUntriaged> profile_;
-   const GURL webui_url_;
-   const int task_manager_string_id_;