From 2a3d405a12221cf2fec963d90b8d89bf0cd29ddc Mon Sep 17 00:00:00 2001
From: stephanbreimann <stephanbreimann@gmail.com>
Date: Thu, 27 Jun 2024 19:55:06 +0200
Subject: [PATCH] Update cd-hit and mmseq installation18

---
 .github/workflows/main.yml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 56473829..27072894 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -63,6 +63,7 @@ jobs:
         sudo apt-get install -y cd-hit mmseqs2
 
     - name: Set up WSL and compile cd-hit
+      if: runner.os == 'Windows'
       shell: bash
       run: |
         sudo apt update
@@ -74,6 +75,7 @@ jobs:
         sudo cp cd-hit /usr/local/bin/
 
     - name: Install mmseqs2 (Windows)
+      if: runner.os == 'Windows'
       shell: pwsh
       run: |
         curl -L -o mmseqs2.zip https://mmseqs.com/latest/mmseqs-win64.zip
@@ -88,6 +90,7 @@ jobs:
         Get-ChildItem $mmseqsBinPath
 
     - name: Verify cd-hit installation (WSL)
+      if: runner.os == 'Windows'
       shell: bash
       run: |
         if ! command -v cd-hit &> /dev/null
@@ -98,6 +101,7 @@ jobs:
         cd-hit --version
 
     - name: Verify mmseqs2 installation
+      if: runner.os == 'Windows'
       shell: pwsh
       run: |
         $mmseqsBinPath = "$Env:USERPROFILE\mmseqs\mmseqs-win64"
@@ -111,7 +115,6 @@ jobs:
           mmseqs --version
         }
 
-
     - name: Run Tests
       run: pytest tests
       env: