From 383ad8690b3bce303e5d1db030e7aaa9fb8aa4ad Mon Sep 17 00:00:00 2001 From: stephanbreimann Date: Thu, 27 Jun 2024 17:25:13 +0200 Subject: [PATCH] Update cd-hit and mmseq installation --- .github/workflows/main.yml | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 719ac93c..c2fc2862 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -38,7 +38,6 @@ jobs: pip install -r requirements.txt pip install pytest - - name: Install cd-hit (Ubuntu) if: runner.os == 'Linux' run: | @@ -55,13 +54,15 @@ jobs: if: runner.os == 'Windows' run: | curl -LO https://github.com/weizhongli/cdhit/releases/download/V4.8.1/cd-hit-v4.8.1-2019-0228.zip - tar -xf cd-hit-v4.8.1-2019-0228.zip -C $Env:Path + Expand-Archive -Path cd-hit-v4.8.1-2019-0228.zip -DestinationPath $Env:USERPROFILE\cdhit + $Env:Path += ";$Env:USERPROFILE\cdhit\cd-hit-v4.8.1-2019-0228\bin" - name: Install mmseqs2 (Windows) if: runner.os == 'Windows' run: | curl -LO https://mmseqs.com/latest/mmseqs-win64.zip - tar -xf mmseqs-win64.zip -C $Env:Path + Expand-Archive -Path mmseqs-win64.zip -DestinationPath $Env:USERPROFILE\mmseqs + $Env:Path += ";$Env:USERPROFILE\mmseqs\mmseqs-win64" - name: Run Tests run: pytest tests