diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
index a9f6055a..544935ad 100644
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diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
index eb42c979..fad5448d 100644
--- a/docs/build/html/.buildinfo
+++ b/docs/build/html/.buildinfo
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diff --git a/docs/build/html/_index/badges.html b/docs/build/html/_index/badges.html
index c2152d89..e1163bd3 100644
--- a/docs/build/html/_index/badges.html
+++ b/docs/build/html/_index/badges.html
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-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/_index/badges.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/_index/badges.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/_index/overview.html b/docs/build/html/_index/overview.html
index a2bd697a..0e1fda2a 100644
--- a/docs/build/html/_index/overview.html
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@@ -95,7 +95,7 @@
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-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/_index/overview.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/_index/overview.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/_index/tables.html b/docs/build/html/_index/tables.html
index 11f186a6..0d66829e 100644
--- a/docs/build/html/_index/tables.html
+++ b/docs/build/html/_index/tables.html
@@ -102,7 +102,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/_index/tables.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/_index/tables.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/_index/usage_principles/data_loading.html b/docs/build/html/_index/usage_principles/data_loading.html
index 9bf5b8c9..ef75b34e 100644
--- a/docs/build/html/_index/usage_principles/data_loading.html
+++ b/docs/build/html/_index/usage_principles/data_loading.html
@@ -95,7 +95,7 @@
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-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/_index/usage_principles/data_loading.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/_index/usage_principles/data_loading.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/api.html b/docs/build/html/api.html
index e5cfd2c3..a202b586 100644
--- a/docs/build/html/api.html
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@@ -125,7 +125,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/api.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/api.rst" class="fa fa-github"> Edit on GitHub</a>
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   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.AAclust.html b/docs/build/html/generated/aaanalysis.AAclust.html
index 51dce869..4b6b8ae5 100644
--- a/docs/build/html/generated/aaanalysis.AAclust.html
+++ b/docs/build/html/generated/aaanalysis.AAclust.html
@@ -110,7 +110,7 @@
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       <li class="breadcrumb-item active">aaanalysis.AAclust</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.AAclust.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.AAclust.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.CPP.html b/docs/build/html/generated/aaanalysis.CPP.html
index 563d682a..9fe66103 100644
--- a/docs/build/html/generated/aaanalysis.CPP.html
+++ b/docs/build/html/generated/aaanalysis.CPP.html
@@ -110,7 +110,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.CPP.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.CPP.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.CPPPlot.html b/docs/build/html/generated/aaanalysis.CPPPlot.html
index 9c4c9cf0..ee586f59 100644
--- a/docs/build/html/generated/aaanalysis.CPPPlot.html
+++ b/docs/build/html/generated/aaanalysis.CPPPlot.html
@@ -110,7 +110,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.CPPPlot.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.CPPPlot.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.SequenceFeature.html b/docs/build/html/generated/aaanalysis.SequenceFeature.html
index b6c9cccb..5720193e 100644
--- a/docs/build/html/generated/aaanalysis.SequenceFeature.html
+++ b/docs/build/html/generated/aaanalysis.SequenceFeature.html
@@ -110,7 +110,7 @@
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       <li class="breadcrumb-item active">aaanalysis.SequenceFeature</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.SequenceFeature.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.SequenceFeature.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.dPULearn.html b/docs/build/html/generated/aaanalysis.dPULearn.html
index 484b619d..978ae3da 100644
--- a/docs/build/html/generated/aaanalysis.dPULearn.html
+++ b/docs/build/html/generated/aaanalysis.dPULearn.html
@@ -107,7 +107,7 @@
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-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.dPULearn.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.dPULearn.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.load_dataset.html b/docs/build/html/generated/aaanalysis.load_dataset.html
index 13c761c8..a71bc3b8 100644
--- a/docs/build/html/generated/aaanalysis.load_dataset.html
+++ b/docs/build/html/generated/aaanalysis.load_dataset.html
@@ -108,7 +108,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.load_dataset.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.load_dataset.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.load_scales.html b/docs/build/html/generated/aaanalysis.load_scales.html
index 38559bdf..6e947fea 100644
--- a/docs/build/html/generated/aaanalysis.load_scales.html
+++ b/docs/build/html/generated/aaanalysis.load_scales.html
@@ -108,7 +108,7 @@
           <li class="breadcrumb-item"><a href="../api.html">API</a></li>
       <li class="breadcrumb-item active">aaanalysis.load_scales</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.load_scales.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.load_scales.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.plot_gcfs.html b/docs/build/html/generated/aaanalysis.plot_gcfs.html
index 97d7d229..5230b66d 100644
--- a/docs/build/html/generated/aaanalysis.plot_gcfs.html
+++ b/docs/build/html/generated/aaanalysis.plot_gcfs.html
@@ -111,7 +111,7 @@
           <li class="breadcrumb-item"><a href="../api.html">API</a></li>
       <li class="breadcrumb-item active">aaanalysis.plot_gcfs</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.plot_gcfs.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.plot_gcfs.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.plot_get_cdict.html b/docs/build/html/generated/aaanalysis.plot_get_cdict.html
index bfa23fd0..91e75d41 100644
--- a/docs/build/html/generated/aaanalysis.plot_get_cdict.html
+++ b/docs/build/html/generated/aaanalysis.plot_get_cdict.html
@@ -111,7 +111,7 @@
           <li class="breadcrumb-item"><a href="../api.html">API</a></li>
       <li class="breadcrumb-item active">aaanalysis.plot_get_cdict</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.plot_get_cdict.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.plot_get_cdict.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.plot_get_cmap.html b/docs/build/html/generated/aaanalysis.plot_get_cmap.html
index 21b5fc87..54b43d5b 100644
--- a/docs/build/html/generated/aaanalysis.plot_get_cmap.html
+++ b/docs/build/html/generated/aaanalysis.plot_get_cmap.html
@@ -111,7 +111,7 @@
           <li class="breadcrumb-item"><a href="../api.html">API</a></li>
       <li class="breadcrumb-item active">aaanalysis.plot_get_cmap</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.plot_get_cmap.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.plot_get_cmap.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.plot_set_legend.html b/docs/build/html/generated/aaanalysis.plot_set_legend.html
index a32cd14c..cec903ec 100644
--- a/docs/build/html/generated/aaanalysis.plot_set_legend.html
+++ b/docs/build/html/generated/aaanalysis.plot_set_legend.html
@@ -111,7 +111,7 @@
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       <li class="breadcrumb-item active">aaanalysis.plot_set_legend</li>
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-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.plot_set_legend.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.plot_set_legend.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.plot_settings.html b/docs/build/html/generated/aaanalysis.plot_settings.html
index 8d2b600b..e03533a3 100644
--- a/docs/build/html/generated/aaanalysis.plot_settings.html
+++ b/docs/build/html/generated/aaanalysis.plot_settings.html
@@ -111,7 +111,7 @@
           <li class="breadcrumb-item"><a href="../api.html">API</a></li>
       <li class="breadcrumb-item active">aaanalysis.plot_settings</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.plot_settings.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/generated/aaanalysis.plot_settings.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
index 7310caee..755857ba 100644
--- a/docs/build/html/genindex.html
+++ b/docs/build/html/genindex.html
@@ -84,7 +84,7 @@
       <li><a href="index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Index</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/genindex" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/genindex" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index.html b/docs/build/html/index.html
index ee496608..9c01ec3a 100644
--- a/docs/build/html/index.html
+++ b/docs/build/html/index.html
@@ -96,7 +96,7 @@
       <li><a href="#" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Welcome to the AAanalysis documentation</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/index.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/CONTRIBUTING_COPY.html b/docs/build/html/index/CONTRIBUTING_COPY.html
index 352b8451..9fadfa34 100644
--- a/docs/build/html/index/CONTRIBUTING_COPY.html
+++ b/docs/build/html/index/CONTRIBUTING_COPY.html
@@ -123,7 +123,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Contributing</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/CONTRIBUTING_COPY.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/index/CONTRIBUTING_COPY.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/citations.html b/docs/build/html/index/citations.html
index 7d784b94..657a06dc 100644
--- a/docs/build/html/index/citations.html
+++ b/docs/build/html/index/citations.html
@@ -95,7 +95,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">&lt;no title&gt;</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/citations.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/index/citations.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/introduction.html b/docs/build/html/index/introduction.html
index ac26421c..b632ff93 100644
--- a/docs/build/html/index/introduction.html
+++ b/docs/build/html/index/introduction.html
@@ -100,7 +100,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Introduction</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/introduction.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/index/introduction.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/references.html b/docs/build/html/index/references.html
index f9037e9d..469a9a17 100644
--- a/docs/build/html/index/references.html
+++ b/docs/build/html/index/references.html
@@ -102,7 +102,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">References</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/references.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/index/references.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/tables_template.html b/docs/build/html/index/tables_template.html
index 641ebde2..ccb0815a 100644
--- a/docs/build/html/index/tables_template.html
+++ b/docs/build/html/index/tables_template.html
@@ -95,7 +95,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Tables</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/tables_template.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/index/tables_template.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/usage_principles.html b/docs/build/html/index/usage_principles.html
index 18b57c35..c2f23955 100644
--- a/docs/build/html/index/usage_principles.html
+++ b/docs/build/html/index/usage_principles.html
@@ -97,7 +97,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Usage Principles</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/usage_principles.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/index/usage_principles.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/tutorials.html b/docs/build/html/tutorials.html
index 42faf751..1ab87bca 100644
--- a/docs/build/html/tutorials.html
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@@ -104,7 +104,7 @@
       <li><a href="index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Tutorials</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/tutorials.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/tutorials.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/source/conf.py b/docs/source/conf.py
index 13fa651e..f96ca800 100755
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -150,7 +150,7 @@
     'display_github': True,  # Add the 'Edit on GitHub' link
     'github_user': 'breimanntools',
     'github_repo': 'aaanalysis',
-    'github_version': 'master/docs/source/',
+    'github_version': 'master/',
 }