From 7ece328118b01a6777369ecc9f0847c694325575 Mon Sep 17 00:00:00 2001 From: stephanbreimann Date: Thu, 27 Jun 2024 17:33:20 +0200 Subject: [PATCH] Update cd-hit and mmseq installation2 --- .github/workflows/main.yml | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index c2fc2862..ec349573 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -53,15 +53,17 @@ jobs: - name: Install cd-hit (Windows) if: runner.os == 'Windows' run: | - curl -LO https://github.com/weizhongli/cdhit/releases/download/V4.8.1/cd-hit-v4.8.1-2019-0228.zip - Expand-Archive -Path cd-hit-v4.8.1-2019-0228.zip -DestinationPath $Env:USERPROFILE\cdhit + curl -L -o cd-hit.zip https://github.com/weizhongli/cdhit/releases/download/V4.8.1/cd-hit-v4.8.1-2019-0228.zip + New-Item -ItemType Directory -Force -Path $Env:USERPROFILE\cdhit + Expand-Archive -Path cd-hit.zip -DestinationPath $Env:USERPROFILE\cdhit $Env:Path += ";$Env:USERPROFILE\cdhit\cd-hit-v4.8.1-2019-0228\bin" - name: Install mmseqs2 (Windows) if: runner.os == 'Windows' run: | - curl -LO https://mmseqs.com/latest/mmseqs-win64.zip - Expand-Archive -Path mmseqs-win64.zip -DestinationPath $Env:USERPROFILE\mmseqs + curl -L -o mmseqs2.zip https://mmseqs.com/latest/mmseqs-win64.zip + New-Item -ItemType Directory -Force -Path $Env:USERPROFILE\mmseqs + Expand-Archive -Path mmseqs2.zip -DestinationPath $Env:USERPROFILE\mmseqs $Env:Path += ";$Env:USERPROFILE\mmseqs\mmseqs-win64" - name: Run Tests