diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst index 2f412a17..cfee8ec9 100644 --- a/CONTRIBUTING.rst +++ b/CONTRIBUTING.rst @@ -207,8 +207,9 @@ Documentation Style - **Autodoc**: We use `Sphinx `_ for automatic inclusion of docstrings in the documentation, including its - `autodoc `_ and - `napoleon `_ extensions. + `autodoc `_, + `napoleon `_, and + `sphinx-design `_ extensions. - **Further Details**: See `docs/source/conf.py` for more. diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle index dd2ab7f0..f60606eb 100644 Binary files a/docs/build/doctrees/environment.pickle and b/docs/build/doctrees/environment.pickle differ diff --git a/docs/build/doctrees/generated/aaanalysis.AAclust.doctree b/docs/build/doctrees/generated/aaanalysis.AAclust.doctree index d43eef9c..40e4c3b3 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.AAclust.doctree and b/docs/build/doctrees/generated/aaanalysis.AAclust.doctree differ diff --git a/docs/build/doctrees/generated/aaanalysis.CPP.doctree b/docs/build/doctrees/generated/aaanalysis.CPP.doctree index 05951eae..25bfe099 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.CPP.doctree and b/docs/build/doctrees/generated/aaanalysis.CPP.doctree differ diff --git a/docs/build/doctrees/generated/aaanalysis.CPPPlot.doctree b/docs/build/doctrees/generated/aaanalysis.CPPPlot.doctree index 4ae9fd9b..df642c67 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.CPPPlot.doctree and b/docs/build/doctrees/generated/aaanalysis.CPPPlot.doctree differ diff --git a/docs/build/doctrees/generated/aaanalysis.SequenceFeature.doctree b/docs/build/doctrees/generated/aaanalysis.SequenceFeature.doctree index b114f6de..5a941ee0 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.SequenceFeature.doctree and b/docs/build/doctrees/generated/aaanalysis.SequenceFeature.doctree differ diff --git a/docs/build/doctrees/generated/aaanalysis.dPULearn.doctree b/docs/build/doctrees/generated/aaanalysis.dPULearn.doctree index d8d1e2a8..ea1a76ef 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.dPULearn.doctree and b/docs/build/doctrees/generated/aaanalysis.dPULearn.doctree differ diff --git a/docs/build/doctrees/generated/aaanalysis.load_dataset.doctree b/docs/build/doctrees/generated/aaanalysis.load_dataset.doctree index 03bd3765..c2ce5cfa 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.load_dataset.doctree and b/docs/build/doctrees/generated/aaanalysis.load_dataset.doctree differ diff --git a/docs/build/doctrees/generated/aaanalysis.load_scales.doctree b/docs/build/doctrees/generated/aaanalysis.load_scales.doctree index 2f0233cf..e805ce65 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.load_scales.doctree and b/docs/build/doctrees/generated/aaanalysis.load_scales.doctree differ diff --git a/docs/build/doctrees/generated/aaanalysis.plot_get_cdict.doctree b/docs/build/doctrees/generated/aaanalysis.plot_get_cdict.doctree index a7ffc838..d30702ab 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.plot_get_cdict.doctree and b/docs/build/doctrees/generated/aaanalysis.plot_get_cdict.doctree differ diff --git a/docs/build/doctrees/generated/aaanalysis.plot_get_cmap.doctree b/docs/build/doctrees/generated/aaanalysis.plot_get_cmap.doctree index aa1fef6a..d5302d05 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.plot_get_cmap.doctree and b/docs/build/doctrees/generated/aaanalysis.plot_get_cmap.doctree differ diff --git a/docs/build/doctrees/generated/aaanalysis.plot_set_legend.doctree b/docs/build/doctrees/generated/aaanalysis.plot_set_legend.doctree index 36b428d2..3856d9ea 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.plot_set_legend.doctree and b/docs/build/doctrees/generated/aaanalysis.plot_set_legend.doctree differ diff --git a/docs/build/doctrees/generated/aaanalysis.plot_settings.doctree b/docs/build/doctrees/generated/aaanalysis.plot_settings.doctree index 32aa05f3..da8825e3 100644 Binary files a/docs/build/doctrees/generated/aaanalysis.plot_settings.doctree and b/docs/build/doctrees/generated/aaanalysis.plot_settings.doctree differ diff --git a/docs/build/doctrees/index.doctree b/docs/build/doctrees/index.doctree index 8a65120e..317630d8 100644 Binary files a/docs/build/doctrees/index.doctree and b/docs/build/doctrees/index.doctree differ diff --git a/docs/build/doctrees/index/citations.doctree b/docs/build/doctrees/index/citations.doctree index 8aaa76f8..3aaff813 100644 Binary files a/docs/build/doctrees/index/citations.doctree and b/docs/build/doctrees/index/citations.doctree differ diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo index 9f00d1d9..9641243d 100644 --- a/docs/build/html/.buildinfo +++ b/docs/build/html/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 5652251cb1fd08d29d15e533cc90f142 +config: 0c277754bd0683ae0dcce018f4b76315 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/docs/build/html/_index/badges.html b/docs/build/html/_index/badges.html index a33f484c..1c9d085a 100644 --- a/docs/build/html/_index/badges.html +++ b/docs/build/html/_index/badges.html @@ -1,7 +1,10 @@ + + - + + @@ -14,19 +17,38 @@ + <no title> — AAanalysis - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + @@ -36,34 +58,63 @@ - + + + + - + + +
+ -
- + + + + + + \ No newline at end of file diff --git a/docs/build/html/_index/overview.html b/docs/build/html/_index/overview.html index f5fc02a3..6903c565 100644 --- a/docs/build/html/_index/overview.html +++ b/docs/build/html/_index/overview.html @@ -1,7 +1,10 @@ + + - + + @@ -14,19 +17,38 @@ + <no title> — AAanalysis - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + @@ -36,34 +58,63 @@ - + + + + - + + +
+ -
- + + + + + + \ No newline at end of file diff --git a/docs/build/html/_index/tables.html b/docs/build/html/_index/tables.html index c0ff6b5f..18a3d542 100644 --- a/docs/build/html/_index/tables.html +++ b/docs/build/html/_index/tables.html @@ -1,7 +1,10 @@ + + - + + @@ -14,19 +17,38 @@ + Tables — AAanalysis - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + @@ -36,36 +58,65 @@ - + + + + - + + +
+ -