diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
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diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
index d35b16df..eb42c979 100644
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index 2cdf54da..c2152d89 100644
--- a/docs/build/html/_index/badges.html
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-              <a href="https://github.com/breimanntools/aaanalysis/blob/_index/badges.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/_index/badges.rst" class="fa fa-github"> Edit on GitHub</a>
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   </ul>
   <hr/>
diff --git a/docs/build/html/_index/overview.html b/docs/build/html/_index/overview.html
index 55bd8123..a2bd697a 100644
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-              <a href="https://github.com/breimanntools/aaanalysis/blob/_index/overview.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/_index/overview.rst" class="fa fa-github"> Edit on GitHub</a>
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diff --git a/docs/build/html/_index/tables.html b/docs/build/html/_index/tables.html
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--- a/docs/build/html/_index/tables.html
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@@ -102,7 +102,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/_index/tables.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/_index/tables.rst" class="fa fa-github"> Edit on GitHub</a>
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   </ul>
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diff --git a/docs/build/html/_index/usage_principles/data_loading.html b/docs/build/html/_index/usage_principles/data_loading.html
index 31a71422..9bf5b8c9 100644
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-              <a href="https://github.com/breimanntools/aaanalysis/blob/_index/usage_principles/data_loading.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/_index/usage_principles/data_loading.rst" class="fa fa-github"> Edit on GitHub</a>
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   </ul>
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diff --git a/docs/build/html/api.html b/docs/build/html/api.html
index ca42770d..e5cfd2c3 100644
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@@ -125,7 +125,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/api.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/api.rst" class="fa fa-github"> Edit on GitHub</a>
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   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.AAclust.html b/docs/build/html/generated/aaanalysis.AAclust.html
index bea597d7..51dce869 100644
--- a/docs/build/html/generated/aaanalysis.AAclust.html
+++ b/docs/build/html/generated/aaanalysis.AAclust.html
@@ -110,7 +110,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.AAclust.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.AAclust.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
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diff --git a/docs/build/html/generated/aaanalysis.CPP.html b/docs/build/html/generated/aaanalysis.CPP.html
index 101e665b..563d682a 100644
--- a/docs/build/html/generated/aaanalysis.CPP.html
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@@ -110,7 +110,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.CPP.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.CPP.rst" class="fa fa-github"> Edit on GitHub</a>
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diff --git a/docs/build/html/generated/aaanalysis.CPPPlot.html b/docs/build/html/generated/aaanalysis.CPPPlot.html
index 895ed8b6..9c4c9cf0 100644
--- a/docs/build/html/generated/aaanalysis.CPPPlot.html
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@@ -110,7 +110,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.CPPPlot.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.CPPPlot.rst" class="fa fa-github"> Edit on GitHub</a>
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   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.SequenceFeature.html b/docs/build/html/generated/aaanalysis.SequenceFeature.html
index 8e8b3e89..b6c9cccb 100644
--- a/docs/build/html/generated/aaanalysis.SequenceFeature.html
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@@ -110,7 +110,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.SequenceFeature.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.SequenceFeature.rst" class="fa fa-github"> Edit on GitHub</a>
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   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.dPULearn.html b/docs/build/html/generated/aaanalysis.dPULearn.html
index 551480f9..484b619d 100644
--- a/docs/build/html/generated/aaanalysis.dPULearn.html
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@@ -107,7 +107,7 @@
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-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.dPULearn.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.dPULearn.rst" class="fa fa-github"> Edit on GitHub</a>
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diff --git a/docs/build/html/generated/aaanalysis.load_dataset.html b/docs/build/html/generated/aaanalysis.load_dataset.html
index ee6bac4e..13c761c8 100644
--- a/docs/build/html/generated/aaanalysis.load_dataset.html
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@@ -108,7 +108,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.load_dataset.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.load_dataset.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.load_scales.html b/docs/build/html/generated/aaanalysis.load_scales.html
index d6d45859..38559bdf 100644
--- a/docs/build/html/generated/aaanalysis.load_scales.html
+++ b/docs/build/html/generated/aaanalysis.load_scales.html
@@ -108,7 +108,7 @@
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       <li class="breadcrumb-item active">aaanalysis.load_scales</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.load_scales.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.load_scales.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.plot_gcfs.html b/docs/build/html/generated/aaanalysis.plot_gcfs.html
index e49aa971..97d7d229 100644
--- a/docs/build/html/generated/aaanalysis.plot_gcfs.html
+++ b/docs/build/html/generated/aaanalysis.plot_gcfs.html
@@ -111,7 +111,7 @@
           <li class="breadcrumb-item"><a href="../api.html">API</a></li>
       <li class="breadcrumb-item active">aaanalysis.plot_gcfs</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.plot_gcfs.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.plot_gcfs.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.plot_get_cdict.html b/docs/build/html/generated/aaanalysis.plot_get_cdict.html
index ca1ba689..bfa23fd0 100644
--- a/docs/build/html/generated/aaanalysis.plot_get_cdict.html
+++ b/docs/build/html/generated/aaanalysis.plot_get_cdict.html
@@ -111,7 +111,7 @@
           <li class="breadcrumb-item"><a href="../api.html">API</a></li>
       <li class="breadcrumb-item active">aaanalysis.plot_get_cdict</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.plot_get_cdict.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.plot_get_cdict.rst" class="fa fa-github"> Edit on GitHub</a>
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   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.plot_get_cmap.html b/docs/build/html/generated/aaanalysis.plot_get_cmap.html
index cef40450..21b5fc87 100644
--- a/docs/build/html/generated/aaanalysis.plot_get_cmap.html
+++ b/docs/build/html/generated/aaanalysis.plot_get_cmap.html
@@ -111,7 +111,7 @@
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       <li class="breadcrumb-item active">aaanalysis.plot_get_cmap</li>
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-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.plot_get_cmap.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.plot_get_cmap.rst" class="fa fa-github"> Edit on GitHub</a>
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   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.plot_set_legend.html b/docs/build/html/generated/aaanalysis.plot_set_legend.html
index 7a3b49e7..a32cd14c 100644
--- a/docs/build/html/generated/aaanalysis.plot_set_legend.html
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@@ -111,7 +111,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.plot_set_legend.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.plot_set_legend.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/generated/aaanalysis.plot_settings.html b/docs/build/html/generated/aaanalysis.plot_settings.html
index 7e228eed..8d2b600b 100644
--- a/docs/build/html/generated/aaanalysis.plot_settings.html
+++ b/docs/build/html/generated/aaanalysis.plot_settings.html
@@ -111,7 +111,7 @@
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       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/generated/aaanalysis.plot_settings.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/generated/aaanalysis.plot_settings.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
index 3d731dbc..7310caee 100644
--- a/docs/build/html/genindex.html
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@@ -84,7 +84,7 @@
       <li><a href="index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Index</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/genindex" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/genindex" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index.html b/docs/build/html/index.html
index 86b5ebfe..ee496608 100644
--- a/docs/build/html/index.html
+++ b/docs/build/html/index.html
@@ -96,7 +96,7 @@
       <li><a href="#" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Welcome to the AAanalysis documentation</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/index.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/CONTRIBUTING_COPY.html b/docs/build/html/index/CONTRIBUTING_COPY.html
index 3f6a7f51..352b8451 100644
--- a/docs/build/html/index/CONTRIBUTING_COPY.html
+++ b/docs/build/html/index/CONTRIBUTING_COPY.html
@@ -123,7 +123,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Contributing</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/index/CONTRIBUTING_COPY.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/CONTRIBUTING_COPY.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/citations.html b/docs/build/html/index/citations.html
index e742696f..7d784b94 100644
--- a/docs/build/html/index/citations.html
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@@ -95,7 +95,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">&lt;no title&gt;</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/index/citations.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/citations.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/introduction.html b/docs/build/html/index/introduction.html
index 9f915516..ac26421c 100644
--- a/docs/build/html/index/introduction.html
+++ b/docs/build/html/index/introduction.html
@@ -100,7 +100,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Introduction</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/index/introduction.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/introduction.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/references.html b/docs/build/html/index/references.html
index dc5a6a47..f9037e9d 100644
--- a/docs/build/html/index/references.html
+++ b/docs/build/html/index/references.html
@@ -102,7 +102,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">References</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/index/references.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/references.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/tables_template.html b/docs/build/html/index/tables_template.html
index 73bcbd00..641ebde2 100644
--- a/docs/build/html/index/tables_template.html
+++ b/docs/build/html/index/tables_template.html
@@ -95,7 +95,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Tables</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/index/tables_template.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/tables_template.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/index/usage_principles.html b/docs/build/html/index/usage_principles.html
index 5dc8a753..18b57c35 100644
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+++ b/docs/build/html/index/usage_principles.html
@@ -97,7 +97,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Usage Principles</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/index/usage_principles.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/index/usage_principles.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/build/html/tutorials.html b/docs/build/html/tutorials.html
index 530a087d..42faf751 100644
--- a/docs/build/html/tutorials.html
+++ b/docs/build/html/tutorials.html
@@ -104,7 +104,7 @@
       <li><a href="index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">Tutorials</li>
       <li class="wy-breadcrumbs-aside">
-              <a href="https://github.com/breimanntools/aaanalysis/blob/tutorials.rst" class="fa fa-github"> Edit on GitHub</a>
+              <a href="https://github.com/breimanntools/aaanalysis/blob/master/docs/source/tutorials.rst" class="fa fa-github"> Edit on GitHub</a>
       </li>
   </ul>
   <hr/>
diff --git a/docs/source/conf.py b/docs/source/conf.py
index 668988f9..13fa651e 100755
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -150,6 +150,7 @@
     'display_github': True,  # Add the 'Edit on GitHub' link
     'github_user': 'breimanntools',
     'github_repo': 'aaanalysis',
+    'github_version': 'master/docs/source/',
 }