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‎CITATION.cff

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title: BridgeDb
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message: 'If you use this software, please cite it as below.'
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type: software
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version: 3.0.26
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date-released: '2024-06-03'
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version: 3.0.27
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date-released: '2024-07-25'
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authors:
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- given-names: Manas
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family-names: Awasthi

‎README.md

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The [BridgeDb releases](https://github.com/bridgedb/BridgeDb/releases) are published to
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[Maven Central](https://search.maven.org/artifact/org.bridgedb/bridgedb-bundle), which means you can use the BridgeDb JARs without needing to compile BridgeDb.
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Usage depends on which module you require. The examples below assumes artifact `org.bridgedb.bio` and version `3.0.26`:
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Usage depends on which module you require. The examples below assumes artifact `org.bridgedb.bio` and version `3.0.27`:
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For [Maven](https://maven.apache.org/):
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<dependency>
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<groupId>org.bridgedb</groupId>
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<artifactId>org.bridgedb.bio</artifactId>
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<version>3.0.26</version>
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<version>3.0.27</version>
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</dependency>
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</dependencies>
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```
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For [Gradle](https://gradle.org/):
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```gradle
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compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.26'
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compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.27'
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```
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For [Ivy](http://ant.apache.org/ivy/):
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```xml
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<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.26"/>
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<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.27"/>
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```
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For [Buildr](https://buildr.apache.org/):
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```buildr
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'org.bridgedb:org.bridgedb.bio:jar:3.0.26'
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'org.bridgedb:org.bridgedb.bio:jar:3.0.27'
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```
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to have an approved Sonatype (http://oss.sonatype.org/) account with push rights:
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```shell
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mvn versions:set -DnewVersion=3.0.26
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mvn versions:set -DnewVersion=3.0.27
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mvn clean deploy
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```
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To make a development (SNAPSHOT) release, use:
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```shell
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mvn versions:set -DnewVersion=3.0.27-SNAPSHOT
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mvn versions:set -DnewVersion=3.0.28-SNAPSHOT
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mvn clean deploy
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```
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‎examples/pom.xml

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<parent>
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<artifactId>bridgedb-bundle</artifactId>
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<groupId>org.bridgedb</groupId>
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<version>3.0.27-SNAPSHOT</version>
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<version>3.0.27</version>
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</parent>
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<modelVersion>4.0.0</modelVersion>
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<groupId>org.bridgedb.examples</groupId>

‎org.bridgedb.bio/pom.xml

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<parent>
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<artifactId>bridgedb-bundle</artifactId>
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<groupId>org.bridgedb</groupId>
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<version>3.0.27-SNAPSHOT</version>
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<version>3.0.27</version>
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</parent>
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<build>

‎org.bridgedb.file.orthoxml/pom.xml

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<parent>
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<artifactId>bridgedb-bundle</artifactId>
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<groupId>org.bridgedb</groupId>
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<version>3.0.27-SNAPSHOT</version>
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<version>3.0.27</version>
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</parent>
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<build>

‎org.bridgedb.gui/pom.xml

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<parent>
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<artifactId>bridgedb-bundle</artifactId>
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<groupId>org.bridgedb</groupId>
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<version>3.0.27-SNAPSHOT</version>
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<version>3.0.27</version>
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</parent>
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<build>

‎org.bridgedb.rdb.construct/pom.xml

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<artifactId>bridgedb-bundle</artifactId>
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<groupId>org.bridgedb</groupId>
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<version>3.0.27-SNAPSHOT</version>
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<version>3.0.27</version>
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</parent>
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<build>

‎org.bridgedb.rdb/pom.xml

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<version>3.0.27-SNAPSHOT</version>
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<version>3.0.27</version>
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<build>

‎org.bridgedb.rdf/pom.xml

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‎org.bridgedb.sql/pom.xml

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<version>3.0.27-SNAPSHOT</version>
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<version>3.0.27</version>
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‎org.bridgedb.tools.batchmapper/pom.xml

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<artifactId>bridgedb-bundle</artifactId>
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<dependency>
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<groupId>org.bridgedb</groupId>
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<artifactId>org.bridgedb</artifactId>
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<version>3.0.27-SNAPSHOT</version>
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<version>3.0.27</version>
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<scope>compile</scope>
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</dependency>
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<dependency>
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<groupId>org.bridgedb</groupId>
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<artifactId>org.bridgedb.bio</artifactId>
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<version>3.0.27-SNAPSHOT</version>
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<version>3.0.27</version>
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<scope>compile</scope>
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</dependency>
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<dependency>
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<groupId>org.bridgedb</groupId>
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<artifactId>org.bridgedb.rdb</artifactId>
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<version>3.0.27-SNAPSHOT</version>
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<version>3.0.27</version>
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<scope>compile</scope>
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</dependency>
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</dependencies>

‎org.bridgedb.tools.info/pom.xml

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‎org.bridgedb.tools.qc/pom.xml

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‎org.bridgedb.tools.voidtool/pom.xml

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‎org.bridgedb.uri.api/pom.xml

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‎org.bridgedb.uri.loader/pom.xml

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<dependencies>

‎org.bridgedb.uri.sql/pom.xml

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‎org.bridgedb.uri.ws.client/pom.xml

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‎org.bridgedb.uri.ws.core/pom.xml

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‎org.bridgedb.uri.ws.server/pom.xml

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‎org.bridgedb.utils/pom.xml

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‎org.bridgedb.webservice.biomart/pom.xml

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‎org.bridgedb.webservice.bridgerest/pom.xml

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‎org.bridgedb.ws.client/pom.xml

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‎org.bridgedb.ws.core/pom.xml

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‎org.bridgedb.ws.server/pom.xml

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‎org.bridgedb/pom.xml

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‎org.bridgedb/src/main/resources/version.props

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# Current version of BridgeDb
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bridgedb.version=3.0.26
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bridgedb.version=3.0.27

‎pom.xml

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<packaging>pom</packaging>
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<version>3.0.27</version>
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<name>BridgeDb bundle</name>
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<description>
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BridgeDb is a framework for finding and mapping equivalent database

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