From 781f39008d3cbb60fff1c18a527616c5c9e61dc7 Mon Sep 17 00:00:00 2001
From: Egon Willighagen <egon.willighagen@gmail.com>
Date: Wed, 13 Jul 2022 11:37:53 +0200
Subject: [PATCH] BridgeDb 3.0.16

---
 CITATION.cff                               |  4 ++--
 README.md                                  | 14 +++++++-------
 examples/pom.xml                           |  2 +-
 org.bridgedb.bio/pom.xml                   |  2 +-
 org.bridgedb.file.orthoxml/pom.xml         |  2 +-
 org.bridgedb.gui/pom.xml                   |  2 +-
 org.bridgedb.rdb.construct/pom.xml         |  2 +-
 org.bridgedb.rdb/pom.xml                   |  2 +-
 org.bridgedb.rdf/pom.xml                   |  2 +-
 org.bridgedb.sql/pom.xml                   |  2 +-
 org.bridgedb.tools.batchmapper/pom.xml     |  8 ++++----
 org.bridgedb.tools.info/pom.xml            |  2 +-
 org.bridgedb.tools.qc/pom.xml              |  2 +-
 org.bridgedb.uri.api/pom.xml               |  2 +-
 org.bridgedb.uri.loader/pom.xml            |  2 +-
 org.bridgedb.uri.sql/pom.xml               |  2 +-
 org.bridgedb.uri.ws.client/pom.xml         |  2 +-
 org.bridgedb.uri.ws.core/pom.xml           |  2 +-
 org.bridgedb.uri.ws.server/pom.xml         |  2 +-
 org.bridgedb.utils/pom.xml                 |  2 +-
 org.bridgedb.webservice.biomart/pom.xml    |  2 +-
 org.bridgedb.webservice.bridgerest/pom.xml |  2 +-
 org.bridgedb.ws.client/pom.xml             |  2 +-
 org.bridgedb.ws.core/pom.xml               |  2 +-
 org.bridgedb.ws.server/pom.xml             |  2 +-
 org.bridgedb/pom.xml                       |  2 +-
 org.bridgedb/version.props                 |  2 +-
 pom.xml                                    |  2 +-
 28 files changed, 38 insertions(+), 38 deletions(-)

diff --git a/CITATION.cff b/CITATION.cff
index 7e99cd602..1b1351d9e 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -2,8 +2,8 @@ cff-version: 1.2.0
 title: BridgeDb
 message: 'If you use this software, please cite it as below.'
 type: software
-version: 3.0.15
-date-released: '2022-06-26'
+version: 3.0.16
+date-released: '2022-07-13'
 authors:
   - given-names: Manas
     family-names: Awasthi
diff --git a/README.md b/README.md
index dcd06d53c..54bbf108d 100644
--- a/README.md
+++ b/README.md
@@ -7,7 +7,7 @@ BridgeDb
 [![codecov](https://codecov.io/gh/bridgedb/BridgeDb/branch/master/graph/badge.svg?token=F0kJdoEt0x)](https://codecov.io/gh/bridgedb/BridgeDb)
 [![NWO](https://img.shields.io/badge/NWO%20Open%20Science-203.001.121-orange)](https://www.nwo.nl/en/projects/203001121)
 
-BridgeDb is currently tested with Java 8 (2.3.x releases) and Java 11 (3.0.x releases and master branch).
+BridgeDb is currently tested with Java 11 and higher (3.0.x releases and master branch).
 
 Using BridgeDb dependencies
 ---------------------------
@@ -15,7 +15,7 @@ Using BridgeDb dependencies
 The [BridgeDb releases](https://github.com/bridgedb/BridgeDb/releases) are published to 
 [Maven Central](http://central.maven.org/maven2/org/bridgedb/), which means you can use the BridgeDb JARs without needing to compile BridgeDb.
 
-Usage depends on which module you require. The examples below assumes artifact `org.bridgedb.bio` and version `3.0.15`:
+Usage depends on which module you require. The examples below assumes artifact `org.bridgedb.bio` and version `3.0.16`:
 
 For [Maven](https://maven.apache.org/):
 
@@ -24,7 +24,7 @@ For [Maven](https://maven.apache.org/):
     <dependency>
         <groupId>org.bridgedb</groupId>
         <artifactId>org.bridgedb.bio</artifactId>
-        <version>3.0.15</version>
+        <version>3.0.16</version>
     </dependency>
 </dependencies>
 ```
@@ -32,19 +32,19 @@ For [Maven](https://maven.apache.org/):
 For [Gradle](https://gradle.org/):
 
 ```gradle
-compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.15'
+compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.16'
 ```
 
 For [Ivy](http://ant.apache.org/ivy/):
 
 ```xml
-<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.15"/>
+<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.16"/>
 ```
 
 For [Buildr](https://buildr.apache.org/):
 
 ```buildr
-'org.bridgedb:org.bridgedb.bio:jar:3.0.15'
+'org.bridgedb:org.bridgedb.bio:jar:3.0.16'
 ```
 
 
@@ -133,7 +133,7 @@ To make the release, run the following commands. Mind you, this requires you
 to have an approved Sonatype (http://oss.sonatype.org/) account with push rights:
 
 ```shell
-mvn versions:set -DnewVersion=3.0.16-SNAPSHOT
+mvn versions:set -DnewVersion=3.0.17-SNAPSHOT
 mvn clean deploy -P release
 ```
 
diff --git a/examples/pom.xml b/examples/pom.xml
index 8a2ebe05e..d5d946fdd 100644
--- a/examples/pom.xml
+++ b/examples/pom.xml
@@ -3,7 +3,7 @@
   <parent>
     <artifactId>bridgedb-bundle</artifactId>
     <groupId>org.bridgedb</groupId>
-    <version>3.0.16-SNAPSHOT</version>
+    <version>3.0.16</version>
   </parent>
   <modelVersion>4.0.0</modelVersion>
   <groupId>org.bridgedb.examples</groupId>
diff --git a/org.bridgedb.bio/pom.xml b/org.bridgedb.bio/pom.xml
index f637bd451..313d53c6b 100644
--- a/org.bridgedb.bio/pom.xml
+++ b/org.bridgedb.bio/pom.xml
@@ -8,7 +8,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
diff --git a/org.bridgedb.file.orthoxml/pom.xml b/org.bridgedb.file.orthoxml/pom.xml
index 33272a253..5d3a0486c 100644
--- a/org.bridgedb.file.orthoxml/pom.xml
+++ b/org.bridgedb.file.orthoxml/pom.xml
@@ -6,7 +6,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
diff --git a/org.bridgedb.gui/pom.xml b/org.bridgedb.gui/pom.xml
index 04736811f..359f8f23d 100644
--- a/org.bridgedb.gui/pom.xml
+++ b/org.bridgedb.gui/pom.xml
@@ -7,7 +7,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
diff --git a/org.bridgedb.rdb.construct/pom.xml b/org.bridgedb.rdb.construct/pom.xml
index 978c0ad5b..84cc8bae8 100644
--- a/org.bridgedb.rdb.construct/pom.xml
+++ b/org.bridgedb.rdb.construct/pom.xml
@@ -7,7 +7,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
diff --git a/org.bridgedb.rdb/pom.xml b/org.bridgedb.rdb/pom.xml
index c496ddff9..f351d7d7a 100644
--- a/org.bridgedb.rdb/pom.xml
+++ b/org.bridgedb.rdb/pom.xml
@@ -7,7 +7,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
diff --git a/org.bridgedb.rdf/pom.xml b/org.bridgedb.rdf/pom.xml
index 79b53cee8..6a37c4c49 100644
--- a/org.bridgedb.rdf/pom.xml
+++ b/org.bridgedb.rdf/pom.xml
@@ -6,7 +6,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
     <build>
diff --git a/org.bridgedb.sql/pom.xml b/org.bridgedb.sql/pom.xml
index be33f2d0a..f03a24076 100644
--- a/org.bridgedb.sql/pom.xml
+++ b/org.bridgedb.sql/pom.xml
@@ -7,7 +7,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
         <build>
diff --git a/org.bridgedb.tools.batchmapper/pom.xml b/org.bridgedb.tools.batchmapper/pom.xml
index 938c263a7..5dee35bb9 100644
--- a/org.bridgedb.tools.batchmapper/pom.xml
+++ b/org.bridgedb.tools.batchmapper/pom.xml
@@ -6,7 +6,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
@@ -33,19 +33,19 @@
                 <dependency>
                         <groupId>org.bridgedb</groupId>
                         <artifactId>org.bridgedb</artifactId>
-                        <version>3.0.16-SNAPSHOT</version>
+                        <version>3.0.16</version>
                         <scope>compile</scope>
                 </dependency>
 		<dependency>
 			<groupId>org.bridgedb</groupId>
 			<artifactId>org.bridgedb.bio</artifactId>
-			<version>3.0.16-SNAPSHOT</version>
+			<version>3.0.16</version>
 			<scope>compile</scope>
 		</dependency>
                 <dependency>
                         <groupId>org.bridgedb</groupId>
                         <artifactId>org.bridgedb.rdb</artifactId>
-                        <version>3.0.16-SNAPSHOT</version>
+                        <version>3.0.16</version>
                         <scope>compile</scope>
                 </dependency>
 	</dependencies>
diff --git a/org.bridgedb.tools.info/pom.xml b/org.bridgedb.tools.info/pom.xml
index 9c9659bc0..53b9c26bf 100644
--- a/org.bridgedb.tools.info/pom.xml
+++ b/org.bridgedb.tools.info/pom.xml
@@ -7,7 +7,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
diff --git a/org.bridgedb.tools.qc/pom.xml b/org.bridgedb.tools.qc/pom.xml
index 0f699edd1..3ef871d5e 100644
--- a/org.bridgedb.tools.qc/pom.xml
+++ b/org.bridgedb.tools.qc/pom.xml
@@ -7,7 +7,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
diff --git a/org.bridgedb.uri.api/pom.xml b/org.bridgedb.uri.api/pom.xml
index ead123a3f..71f34e4da 100644
--- a/org.bridgedb.uri.api/pom.xml
+++ b/org.bridgedb.uri.api/pom.xml
@@ -7,7 +7,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
         <build>
diff --git a/org.bridgedb.uri.loader/pom.xml b/org.bridgedb.uri.loader/pom.xml
index bec4423bf..81453494e 100644
--- a/org.bridgedb.uri.loader/pom.xml
+++ b/org.bridgedb.uri.loader/pom.xml
@@ -6,7 +6,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 	
    <dependencies>
diff --git a/org.bridgedb.uri.sql/pom.xml b/org.bridgedb.uri.sql/pom.xml
index cdb836c09..4e6ee65f6 100644
--- a/org.bridgedb.uri.sql/pom.xml
+++ b/org.bridgedb.uri.sql/pom.xml
@@ -7,7 +7,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
         <build>
diff --git a/org.bridgedb.uri.ws.client/pom.xml b/org.bridgedb.uri.ws.client/pom.xml
index e0087f635..30b4cedbc 100644
--- a/org.bridgedb.uri.ws.client/pom.xml
+++ b/org.bridgedb.uri.ws.client/pom.xml
@@ -8,7 +8,7 @@
     <parent>
         <artifactId>bridgedb-bundle</artifactId>
         <groupId>org.bridgedb</groupId>
-        <version>3.0.16-SNAPSHOT</version>
+        <version>3.0.16</version>
     </parent>
 
     <build>
diff --git a/org.bridgedb.uri.ws.core/pom.xml b/org.bridgedb.uri.ws.core/pom.xml
index 383fbbe7b..7664a9e0d 100644
--- a/org.bridgedb.uri.ws.core/pom.xml
+++ b/org.bridgedb.uri.ws.core/pom.xml
@@ -8,7 +8,7 @@
     <parent>
         <artifactId>bridgedb-bundle</artifactId>
         <groupId>org.bridgedb</groupId>
-        <version>3.0.16-SNAPSHOT</version>
+        <version>3.0.16</version>
     </parent>
 
         <build>
diff --git a/org.bridgedb.uri.ws.server/pom.xml b/org.bridgedb.uri.ws.server/pom.xml
index 73e0fda4d..6aff145ed 100644
--- a/org.bridgedb.uri.ws.server/pom.xml
+++ b/org.bridgedb.uri.ws.server/pom.xml
@@ -8,7 +8,7 @@
     <parent>
         <artifactId>bridgedb-bundle</artifactId>
         <groupId>org.bridgedb</groupId>
-        <version>3.0.16-SNAPSHOT</version>
+        <version>3.0.16</version>
     </parent>
 	
     <build>
diff --git a/org.bridgedb.utils/pom.xml b/org.bridgedb.utils/pom.xml
index ae31b3899..5e7b0bdd1 100644
--- a/org.bridgedb.utils/pom.xml
+++ b/org.bridgedb.utils/pom.xml
@@ -7,7 +7,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
         <build>
diff --git a/org.bridgedb.webservice.biomart/pom.xml b/org.bridgedb.webservice.biomart/pom.xml
index 1c1145f8c..ca0ad4b9e 100644
--- a/org.bridgedb.webservice.biomart/pom.xml
+++ b/org.bridgedb.webservice.biomart/pom.xml
@@ -8,7 +8,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
diff --git a/org.bridgedb.webservice.bridgerest/pom.xml b/org.bridgedb.webservice.bridgerest/pom.xml
index d2e94c2f1..2804a4fab 100644
--- a/org.bridgedb.webservice.bridgerest/pom.xml
+++ b/org.bridgedb.webservice.bridgerest/pom.xml
@@ -8,7 +8,7 @@
   <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
diff --git a/org.bridgedb.ws.client/pom.xml b/org.bridgedb.ws.client/pom.xml
index c0aedbc6c..51d92ccc7 100644
--- a/org.bridgedb.ws.client/pom.xml
+++ b/org.bridgedb.ws.client/pom.xml
@@ -8,7 +8,7 @@
     <parent>
         <artifactId>bridgedb-bundle</artifactId>
         <groupId>org.bridgedb</groupId>
-        <version>3.0.16-SNAPSHOT</version>
+        <version>3.0.16</version>
     </parent>
 
     <build>
diff --git a/org.bridgedb.ws.core/pom.xml b/org.bridgedb.ws.core/pom.xml
index 2cbc7e2d3..f93b776ec 100644
--- a/org.bridgedb.ws.core/pom.xml
+++ b/org.bridgedb.ws.core/pom.xml
@@ -8,7 +8,7 @@
     <parent>
         <artifactId>bridgedb-bundle</artifactId>
         <groupId>org.bridgedb</groupId>
-        <version>3.0.16-SNAPSHOT</version>
+        <version>3.0.16</version>
     </parent>
 
         <build>
diff --git a/org.bridgedb.ws.server/pom.xml b/org.bridgedb.ws.server/pom.xml
index 7e6ef48c1..8bc1d7023 100644
--- a/org.bridgedb.ws.server/pom.xml
+++ b/org.bridgedb.ws.server/pom.xml
@@ -8,7 +8,7 @@
     <parent>
         <artifactId>bridgedb-bundle</artifactId>
         <groupId>org.bridgedb</groupId>
-        <version>3.0.16-SNAPSHOT</version>
+        <version>3.0.16</version>
     </parent>
 
      <build>
diff --git a/org.bridgedb/pom.xml b/org.bridgedb/pom.xml
index 815244017..25b7d995d 100644
--- a/org.bridgedb/pom.xml
+++ b/org.bridgedb/pom.xml
@@ -33,7 +33,7 @@
     <parent>
   	<artifactId>bridgedb-bundle</artifactId>
   	<groupId>org.bridgedb</groupId>
-  	<version>3.0.16-SNAPSHOT</version>
+  	<version>3.0.16</version>
   </parent>
 
 	<build>
diff --git a/org.bridgedb/version.props b/org.bridgedb/version.props
index ec88155d4..341ff33c9 100644
--- a/org.bridgedb/version.props
+++ b/org.bridgedb/version.props
@@ -1,2 +1,2 @@
 # Current version of BridgeDb
-bridgedb.version=3.0.16-SNAPSHOT
+bridgedb.version=3.0.16
diff --git a/pom.xml b/pom.xml
index 9f2c83789..967cfee1b 100644
--- a/pom.xml
+++ b/pom.xml
@@ -4,7 +4,7 @@
   <groupId>org.bridgedb</groupId>
   <artifactId>bridgedb-bundle</artifactId>
   <packaging>pom</packaging>
-  <version>3.0.16-SNAPSHOT</version>	
+  <version>3.0.16</version>	
   <name>BridgeDb bundle</name>
 	<description>
 		BridgeDb is a framework for finding and mapping equivalent database